Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq284 104 2e-17 >seq284 Length=1419496 Score = 104 bits (114), Expect = 2e-17 Identities = 170/241 (71%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| ||||||| | || ||| |||||||| || | || |||||||| ||||| | Sbjct 890254 CCTT-TCTTTAGCATCTGCAATATATGTATCGATTAACAAAGAGTACATTTCTGAGTGCA 890196 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG 14241 |||||||| || | ||||| ||||||||||| | || || | ||| || ||| Sbjct 890195 CATTTTCCATTGCAACTTGAAAGCCATAAAAGCAACGTGCCTCTGTTATTTGCACCTCCT 890136 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 | ||||| ||| | | ||||||||| || || |||||| ||| ||||||||||| | Sbjct 890135 GGCTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAAGCAGCAAAAAATGCTA 890076 Query 14302 ATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAATCGGATAAATCC 14360 ||| | | ||||| | || ||| | || ||| | | ||||| || |||||||| Sbjct 890075 ATACATGTGATATAAATTTTTTCTCACTGATAGTT-AAACTGTTCCAGTCAAATAAATCC 890017 Query 14361 T 14361 | Sbjct 890016 T 890016 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||| ||| ||||| || ||||| | |||||||| | ||||| || | Sbjct 890558 CCTCATCTCTAGAAATGAGTTCATTACTGAATGTAAGGCCTGGCATAAGTCCTCTCTTCT 890499 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 |||||||||| || |||||||| || |||||| || || || ||||||||||| | Sbjct 890498 TTAACCAAAAAATGGCAGCAAAACTACCACTAAAGAAAATACCTTCCACTGCAGCAAATG 890439 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | |||| ||||| ||| | || ||| | |||||| ||| ||||| | || Sbjct 890438 CAATTACACGTTCGGGAAAGGTAGCAGTTTCATGATTTATCCAATTTAATGCCCAATTAG 890379 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 |||| | || | | || ||||||| |||||||||||| | ||| Sbjct 890378 CTTTTCTCGCAACACACGGCAAATTTTCAATCGCATTAAATAAAAAGTCC 890329 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742 ||||||| ||||| || ||||| || |||| ||| ||||||||||| |||| | | | Sbjct 890872 CAACCTAATTCTACAAGCAATCTGTCCGCAACAAATTCAATATATTGGCACATGAGTTTA 890813 Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802 || ||||| ||||| | || || || | | ||||||||||||| ||| || Sbjct 890812 CAGTTCATGCCTATCATTTCAACGGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATTTGG 890753 Query 13803 ACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTA 13862 || || ||||| ||||| ||| | ||||| ||||| | | | | |||||| Sbjct 890752 ACCGCGTCTTTAATAATTGATGTGACGCGTTCATTCGAAGGTTTCTGTATGATGTGTTTA 890693 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 || ||||| || |||||||| ||||| | |||| Sbjct 890692 AACATTAAGCATGCAAAATCGCAATGCAATCCCT 890659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 13559 TTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGT 13618 |||||| | || || ||| |||||||||||| | |||| |||| || || ||||| || Sbjct 891068 TTTGTTTGCCATCACTCCCCATTTTTGATATTCTCCAACTTTTTTCTCGAAAAAGTTCGT 891009 Query 13619 TTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||||| || |||| |||||| ||||| ||||||||| Sbjct 891008 CTTACCTTCCAAAGAAATATGTTCCATGAAATCGAATGGATTT 890966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 14359 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14418 |||||||||| |||||||| || ||||||||||| || | |||||||| |||||| Sbjct 889930 CCTTAGAAAGGTCTACTTCCTCCACTGTCCAAAAGGAGGCTTCTGCTTTTTTGTACATTT 889871 Query 14419 CCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT-CGAAGATGTTTCTTTAAGA 14477 ||| || || || ||||||||||| |||||||| || ||| ||||||| || Sbjct 889870 GCCAAATGTCAGGCCATTGGATAGGAAAAACAACAAATCTACGTGGAT-TTTCTTTTAGC 889812 Query 14478 ATTGGTTC 14485 | |||||| Sbjct 889811 AGTGGTTC 889804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479562697724400