Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq65 109 4e-19 seq49 95.1 9e-15 >seq65 Length=771584 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| |||||||| || | ||| ||| ||||| | ||||||||| || Sbjct 536896 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATATTGTAATCTGAA 536837 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || |||||||||||||| ||||| ||||| ||||| || |||| || Sbjct 536836 AGTGTGCGCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 536777 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | |||||| |||||| || Sbjct 536776 ATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCTATTGTGTCTGAAGCCTCAACT 536717 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || || || || || || || |||||| Sbjct 536716 TCGAGTGTGATGGTTTTCCCTGTGAGCGTCTTGACGAAGATCTGCATT 536669 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| |||||||| || | ||| ||| ||||| | ||||||||| || Sbjct 537352 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATATTGTAATCTGAA 537293 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||||||||||||| ||||| ||||| ||||| || |||| || Sbjct 537292 AGGGTGCGCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 537233 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | || || | | | |||||| |||||| || Sbjct 537232 ATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCTATTGTGTCTGAAGCCTCAACT 537173 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || || || || || || || |||||| Sbjct 537172 TCGAGTGTGATGGTTTTCCCCGTCAGCGTCTTAACGAAGATCTGCATT 537125 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| ||||||||||| | ||| |||||||| | || ||||| || Sbjct 537808 CCTCCTCGGAGTCGCAACACCAAATGCAGGGTGGATTCCTTTTGGATGTTATAATCTGAA 537749 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || || |||||||| ||||| ||||| ||||| || |||| || Sbjct 537748 AGAGTGCGCCCATCTTCTAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 537689 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | | | |||||| || || || Sbjct 537688 ATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAGGCTTCTACC 537629 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || || || || ||||| || |||||| Sbjct 537628 TCCAAGGTGATGGTTTTCCCTGTGAGCGTCTTGACAAAGATCTGCATT 537581 >seq49 Length=1886280 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| | || | ||||| ||| ||||||||| | ||| || || || Sbjct 1161775 CCTCCTCGGAGTCGAAGTACAAGATGGAGAGTTGACTCCTTTTGAATATTATAGTCAGAA 1161834 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| | || || | ||| || || || |||||||||| ||||| || | || Sbjct 1161835 AGTGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 1161894 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || ||| | || || | ||| || || |||||| || Sbjct 1161895 ATACCCTCCTTATCTTGGATTTTTGCCTTTACATTTTCAATGGTATCTGAAGCCTCAACT 1161954 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || |||||||||||||| || || || || ||||||||||| Sbjct 1161955 TCTAAAGTAATAGTTTTTCCGGTAAGGGTCTTGACGAAAATTTGCAT 1162001 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| | || | ||||| ||| ||||||||| | ||| || || || Sbjct 1161101 CCTCCTCGGAGTCGAAGTACAAGATGGAGAGTTGACTCCTTTTGAATATTATAGTCAGAA 1161160 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| | || || | ||| || || || |||||||||| || ||||| | || Sbjct 1161161 AGTGTGCGTCCATCTTCAAGTTGCTTACCAGCGAAAATCAATCTTTGCTGATCTGGGGGA 1161220 Query 43003 ACACCTTCTTTTTCGCTGATCAACT-CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | | || || | ||| || || ||| || || Sbjct 1161221 ATGCCCTCCTTGTC-CTGAATTTTTGCCTTCACATTCTCAATCGTATCAGAAGCTTCAAC 1161279 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || || ||||| || |||||||||||| Sbjct 1161280 TTCTAAAGTAATAGTTTTTCCAGTAAGGGTTTTGACGAAAATTTGCATT 1161328 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || |||| | || | ||||| ||| ||||| || | ||| || || | Sbjct 1162231 CCACCTCGGAGTCGAAGTACAAGATGGAGAGTTGATTCCTTCTGAATATTATAGTCTGCA 1162290 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| |||| || | || || || || |||||||||| ||||||||| | || Sbjct 1162291 AGTGTGCGTCCGTCTTCAAGCTGCTTTCCAGCGAAAATCAATCTCTGTTGATCAGGTGGA 1162350 Query 43003 ACACCTTCTTTTTCGCTGATCAACT-CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| | | || || | ||| || || ||| || || Sbjct 1162351 ATACCTTCCTTGTC-CTGAATTTTTGCCTTCACATTCTCAATCGTATCAGAAGCTTCAAC 1162409 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||||||||| || || ||||| || |||||||||||| Sbjct 1162410 TTCTAAAGTAATAGTTTTTCCCGTAAGGGTTTTGACGAAAATTTGCATT 1162458 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||| || || | | ||| ||| |||| || | || || || || ||| Sbjct 1162039 TCCTTCTGAATATTATAGTCTGCAAGTGTGCGTCCGTCTTCAAGCTGCTTACCAGCGAAA 1162098 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACT-CTTTGACTCT 43037 ||||||| ||||||||| | || | |||||| || || |||| | | || || | Sbjct 1162099 ATCAATCTCTGTTGATCAGGTGGAATACCTTCCTTGTC-CTGAATTTTTGCCTTCACATT 1162157 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||| || ||| || || |||| || || || ||||| || |||||||| || Sbjct 1162158 CTCAATTGTATCAGAAGCTTCAACTTCTAAAGTGATTGTCTTTCCCGTGAGAGTTTTAAC 1162217 Query 43098 AAAAATTTGCATT 43110 |||||||||||| Sbjct 1162218 GAAAATTTGCATT 1162230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381241474830828