Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq59 172 7e-38 seq284 107 3e-18 >seq59 Length=4191719 Score = 172 bits (190), Expect = 7e-38 Identities = 206/280 (74%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||| || || || ||| ||||| |||||| || || | || ||| | | ||| Sbjct 764808 CTGAATAGAACCGTTATTTGCTATAATTTCATTTTTCATGTCCTGATCCCAAAGATCTCT 764749 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || || | | | | | | |||||||||||| |||||||| ||||||||||| ||||| Sbjct 764748 TTCAGTAAGATCCCGTAACAAATGAGGATTAACAACTTGAAACTCTCCAGACAAAACTCT 764689 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 | || ||||||||| | ||||| ||||| | |||||||||||||| |||||||| || Sbjct 764688 TCTTGTATAAATATTATTAGTATAGGGTTCTATGGACTCATTATTTCCTAAAATTTGCGC 764629 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 ||| ||||| || ||||||||||| | || | | |||||||| |||||| || Sbjct 764628 AGTAGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAAT 764569 Query 71289 TTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGT 71328 ||| || |||| || |||||| ||| | ||| | |||| Sbjct 764568 TTTTTCCTTTAAAGCAGCCCAATCCCATAAATCAGTTGGT 764529 Score = 104 bits (114), Expect = 3e-17 Identities = 199/290 (69%), Gaps = 20/290 (7%) Strand=Plus/Minus Query 71578 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACTATT 71634 |||||||||| ||||||||||| | ||| |||||||||| | ||| |||| ||| Sbjct 764153 GCTTCTGGAACTGGATAATAATTGACATCAATAATTTTATCCAAATTATAGGTGACAATT 764094 Query 71635 ACTTTGACCACATCCTTT---AGTTTGAGAAAATCAAATCTCCCATCTA-------TTAC 71684 || ||| |||| ||||| ||||||||| | || || |||| Sbjct 764093 ---TTCGTCAC---CTTTCGAAGTTTTTCAAAATCAAAAGTTTTAT-TAGCAGGATTTAC 764041 Query 71685 AAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744 ||||| |||| |||| || |||| ||| || || || | |||| | | || || Sbjct 764040 AAACATATTCACAGCAATTGAAGCCAAATTGCATACAGCAATTTCATCTGGACTGGAGTA 763981 Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804 |||| |||||| ||||| | ||| ||||||||||| ||||||| |||||| ||||| Sbjct 763980 CTGTACAATTTCTGTGCATAAATTGCTACACTTGATTGTTCCTATATTTTGATGATTTGA 763921 Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 || || || ||| |||||||| || | ||||| || ||||||| Sbjct 763920 TTTACGATTGCAGTGATCTTTATAAAGCATGTAAGGAGTTCCTGTTTCAA 763871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || |||||| ||| ||||| |||||| |||| | || ||||| || | Sbjct 763504 TTCAAATTCATCACCCCAAACATCATCTAAACCAGGAGATTCGTGTGGGCACATTAAAGT 763445 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||| |||| || |||||||||||||| |||||||||||||| | ||| ||| | Sbjct 763444 CCAAATACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCATAAAGC-ATAGA 763386 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG-TATTC 72099 ||| ||||| | ||||| || || || |||| ||||| Sbjct 763385 ATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTTATTC 763347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 176/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||||||| || | |||| | ||| ||| | || || ||||| || ||||| Sbjct 762895 CTAGACATTTGCTGTTGCTTAGTACATGCAGCAAAAAGAGTTGGTGAAGCATGTGTAAAA 762836 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 762835 TAACGTTCTGATAAGAAATTATATGTTTCTATAGCTCTGTCAATATCATCACCATGGATA 762776 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 | || || || | ||||||||| ||||| || || ||||| | || || ||| || Sbjct 762775 GCAACTGCAACTCTCATTAACATGTGCTGTGGCCTCTCAACAACTTTTCCATATATCTTT 762716 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 72634 || || ||| | |||| | ||||| ||||||||||| ||||| ||||| |||| | Sbjct 762715 AATAAATAGCTTCTTTCAAGTGTTTTGAAACCAAAATAATTGTAACTGAAA--TCTCTAT 762658 Query 72635 CGTAAATAATAACCGAATT 72653 | ||||| || | ||||| Sbjct 762657 CATAAATTATTGCAGAATT 762639 >seq284 Length=1419496 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 42315 TTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 |||| ||| |||| || |||||||||||| || | | ||||||||||| || | | Sbjct 890252 TTTCTTTAGCATCTGCAATATATGTATCGATTAACAAAGAGTACATTTCTGAGTGCACAT 890193 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 |||| || || | ||||| || || || || | ||||| || | || || || | Sbjct 890192 TTTCCATTGCAACTTGAAAGCCATAAAAGCAACGTGCCTCTGTTATTTGCACCTCCTGGC 890133 Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 |||||||||| | | |||||| || || ||||| ||| || |||||||| || |||| Sbjct 890132 TAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAAGCAGCAAAAAATGCTAATA 890073 Query 42495 CATGTTTTATAAAATATTTTTC 42516 ||||| |||||| | ||| || Sbjct 890072 CATGTGATATAAATTTTTTCTC 890051 Score = 100 bits (110), Expect = 4e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 41861 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATAT 41920 ||| ||| |||| | || ||||| || |||||| || || | ||||| |||||| Sbjct 890887 TTACAAACCTTTTGGCAACCTAATTCTACAAGCAATCTGTCCGCAACAAATTCAATATAT 890828 Query 41921 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAAT 41980 ||| | || ||| ||||| ||||| | || ||| || | ||| |||| | |||| Sbjct 890827 TGGCACATGAGTTTACAGTTCATGCCTATCATTTCAACGGGTAAAGCGTCAGTTAAAAAT 890768 Query 41981 TCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGA 42040 ||||||||||| |||||||||| | ||||| ||| | || |||| ||| || Sbjct 890767 TCTTGTTCAATTTGGACCGCGTCTTTAATAATTGATGTGAC---GCGTTCATTCGAAGGT 890711 Query 42041 TAC---AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 42089 | | | | ||||||||||| || ||||| |||||||| |||| |||| Sbjct 890710 TTCTGTATGATGTGTTTAAACATTAAGCATGCAAAATCGCAATGCAATCCCT 890659 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCTTGA--GACATAACTCCCATTTT 41775 |||||||||| ||| | | ||||| | ||| | ||| | ||| |||||| ||| Sbjct 891104 TTAAAAGTCAGCATTAACTGTAAAATTGCTCTCTATTTTGTTTGCCATCACTCCCCATTT 891045 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| ||||| || || ||| |||||||| || ||||| |||||||| || |||| ||| Sbjct 891044 TTGATATTCTCCAACTTTTTTCTCGAAAAAGTTCGTCTTACCTTCCAAAGAAATATGTTC 890985 Query 41836 CATGAAATCAAACGGATT 41853 ||||||||| || ||||| Sbjct 890984 CATGAAATCGAATGGATT 890967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670907942210160