Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq65 111 1e-19 seq68 109 4e-19 >seq65 Length=771584 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | || |||||||| || || ||| ||||||||| ||||| ||||| | Sbjct 536896 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATATTGTAATC-TGA 536838 Query 43955 AATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || ||| |||| ||||||||||| || ||||| ||||| || |||||||| |||| Sbjct 536837 AAGTGTGCGCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 536778 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || || || | | | || |||| | ||| || Sbjct 536777 GATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCTATTGTGTCTGAAGCCTCAAC 536718 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| || || | ||||| || || || ||||| Sbjct 536717 TTCGAGTGTGATGGTTTTCCCTGTGAGCGTCTTGACGAAGATCTGCAT 536670 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | || |||||||| || || ||| ||||||||| ||||| ||||| | Sbjct 537352 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATATTGTAATC-TGA 537294 Query 43955 AATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | ||| |||| ||||||||||| || ||||| ||||| || |||||||| |||| Sbjct 537293 AAGGGTGCGCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 537234 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| ||| || || || | | | || |||| | ||| || Sbjct 537233 GATACCTTCTTTGTCTTGAATCTTGGCCTTAACGTTTTCTATTGTGTCTGAAGCCTCAAC 537174 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| || || | ||||| || || || ||||| Sbjct 537173 TTCGAGTGTGATGGTTTTCCCCGTCAGCGTCTTAACGAAGATCTGCAT 537126 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | || |||||||| || || ||| ||||||||| || || ||||| Sbjct 538492 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATGTTGTAATCTGAA 538433 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || ||| |||| ||||| ||||| || ||||||||||| || |||||||| |||| Sbjct 538432 AGAGTG-CGCCCATCTTCCAACTGTTTGCCAGCAAATATCAAACGCTGCTGGTCGGGAGG 538374 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| ||| || || || || | | || |||| | ||| || Sbjct 538373 GATTCCCTCTTTGTCTTGAATCTTAGCCTTAACGTTATCTATTGTGTCTGAAGCCTCAAC 538314 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | || || ||||| || ||||| Sbjct 538313 TTCCAGGGTGATGGTTTTCCCCGTGAGTGTTTTGACAAAGATCTGCAT 538266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | || ||||||||||| || ||| || ||||| || |||||||| | Sbjct 537808 CCTCCTCGGAGTCGCAACACCAAATGCAGGGTGGATTCCTTTTGGATGTTATAATC-TGA 537750 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | ||| |||| || || ||||| || ||||| ||||| || |||||||| |||| Sbjct 537749 AAGAGTGCGCCCATCTTCTAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 537690 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || || || | | | || |||| | || || Sbjct 537689 GATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAGGCTTCTAC 537630 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 537629 CTCCAAGGTGATGGTTTTCCCTGTGAGCGTCTTGACAAAGATCTGCAT 537582 >seq68 Length=1848670 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 43932 CTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATA 43991 |||||||||| |||||||| | ||| |||| || || |||||||| ||||| | Sbjct 812922 CTTTTTGAATGTTATAATCTGACAGAGTACGTCCATCTTCTAACTGTTTTCCAGCAAAAA 812981 Query 43992 TCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAG 44051 | | |||||||| || | || | ||||||||||| ||||||| ||| || | Sbjct 812982 TGAGACGTTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTTGCTTTCACATTTT 813041 Query 44052 CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAA 44111 ||| |||||| | | ||||| || | ||||| |||||||| || ||||| ||||| | Sbjct 813042 CAATAGTATCCGATGCTTCCACTTCAAGGGTAATGGTTTTACCCGTCAAAGTTTTCACGA 813101 Query 44112 ATATTTGCAT 44121 |||| ||||| Sbjct 813102 ATATCTGCAT 813111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354658408695768