Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq68 96.9 3e-15 seq65 91.5 1e-13 seq49 91.5 1e-13 seq394 84.2 2e-11 >seq68 Length=1848670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 20019 CTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAA 20078 ||||||| ||||| ||||| || ||| |||||| || ||||| || ||| ||| Sbjct 812922 CTTTTTGAATGTTATAATCTGACAGAGTACGTCCATCTTCTAACTGTTTTCCAGCAAAAA 812981 Query 20079 TAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGC 20138 | || | || |||||| || | |||||||| || ||||||| |||||| | Sbjct 812982 TGAGACGTTGCTGATCGGGTGGAATTCCTTCTTTATCCTGAATTTTTGCTTTCACATTTT 813041 Query 20139 CAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAA 20198 ||| || ||| | |||| ||| | |||||||||||| || ||||| ||||| || | Sbjct 813042 CAATAGTATCCGATGCTTCCACTTCAAGGGTAATGGTTTTACCCGTCAAAGTTTTCACGA 813101 Query 20199 AAATTTGCATTTT 20211 | || |||||||| Sbjct 813102 ATATCTGCATTTT 813114 >seq65 Length=771584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | ||||||||| || ||||| || |||||||| ||||||||||| Sbjct 537582 TTCCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATGTTGTAATCTG 537523 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| ||||||||| |||||||| ||| | || | | ||| || ||| | Sbjct 537522 AAAGAGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATTAAACGCTGCTGGTCGGGAG 537463 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| ||| || || || | | | | || | ||| Sbjct 537462 GGATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAGGCTTCTA 537403 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| |||||||| || || | ||| |||||||| || |||||| Sbjct 537402 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTCTTGACAAAGATCTGCATT 537353 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | ||||||||| || ||||| || || ||||| ||||||||||| Sbjct 538722 TTCCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCCTTTTGGATGTTGTAATCTG 538663 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACG 20098 | ||| ||||||||| || || || ||| | || || | ||| || || || | Sbjct 538662 AAAGAGTGCGTCCATCTTCCAACTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCAGAAG 538603 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | ||||||||||| | ||||| ||| || | | | | || || || Sbjct 538602 GG-ATTCCTTCTTTGTCTACGATTTTGGCTTTAACGTTCTCTATTGTGTCTGAAGCCTCA 538544 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||| ||| |||||||| || || | ||| ||||| || || |||||| Sbjct 538543 ACTTCCAGGGTGATGGTTTTCCCCGTGAGCGTCTTGACGAAGATCTGCATT 538493 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/138 (74%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | ||||||||| || ||||| || |||||||| || |||||||| Sbjct 536898 TTCCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATATTGTAATCTG 536839 Query 20040 CCATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | ||| | | |||||||||||||||||| ||| | || | | ||| || ||| Sbjct 536838 --AAAGTGTGCGCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGG 536781 Query 20098 GGGCACGCCTTCTTTGTC 20115 || | ||||||||||| Sbjct 536780 AGGGATTCCTTCTTTGTC 536763 >seq49 Length=1886280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| || |||||||| ||||||||||| | ||| | |||||| | |||| Sbjct 1162939 TGAAGTGTTGACTCTTTTTGAATGTTGTAATCAGAGAGTGTTCTTCCATCTTCAAGTTGT 1162998 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| |||| | || || ||||| ||| | || || ||||| ||||||| Sbjct 1162999 TTGCCAGCAAAAATCAATCTTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATTTTT 1163058 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | ||| | |||| | ||| || | ||| || |||||||| ||| Sbjct 1163059 GCCTTCACATTTTCAATTGTATCGGATGCTTCAACCTCGAGGGTTATTGTTTTGCCAGTC 1163118 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || || |||||||| || ||||| Sbjct 1163119 AATGTCTTGACAAAGATCTGCAT 1163141 >seq394 Length=4544675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 ||| |||| ||| | || |||||||||| ||||||||| || || ||||| ||||| Sbjct 4399808 TCCACCTCTTAAACGTAATACCAAATGTAATGTAGATTCCTTCTGAATGTTATAATCTGA 4399749 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC 20094 | |||| || |||||| ||||||||||| ||| | || | ||||| ||||| Sbjct 4399748 TAAAGTTCTACCATCTTCTAATTGTTTGCCAGCAAAGATTAATCTCTGCTGATC 4399695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419446235222046