Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq65 89.7 4e-13 seq49 84.2 2e-11 >seq65 Length=771584 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 |||||||| || |||||| ||||||||| ||||| ||||| | || ||| ||| | || Sbjct 538021 AACACTAAGTGCAGTGTGGACTCCTTTTGGATGTTATAATCTGA-AAGTGTGCGCCCATC 537963 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||| ||| || || | | || ||||||||||| || || | | ||| ||||| Sbjct 537962 TTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATTCCTTCTTTGTC 537903 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||| | | |||| || || | || ||| || | || ||||| Sbjct 537902 TTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAAGCCTCAACGTCCAGGGTGATGGT 537843 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||| ||||| ||||| |||||||| Sbjct 537842 TTTCCCCGTGAGCGTTTTGACAAAGATCTGCAT 537810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTC 48573 ||||| || || || ||| ||||||||| || |||||||| | || ||| ||| | || Sbjct 537109 AACACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAATCTGA-AAGTGTGCGCCCATC 537051 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||| ||| ||||| | | || ||||||||||| || || | | ||| ||||| Sbjct 537050 TTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATTCCTTCTTTGTC 536991 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||| | | |||| || || | || ||| |||| ||| ||||| Sbjct 536990 TTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAAGCCTCAACTTCGAGTGTGATGGT 536931 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||| || || || || |||||||| Sbjct 536930 TTTCCCTGTGAGCGTCTTGACGAAGATCTGCAT 536898 >seq49 Length=1886280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| || ||||| ||||| || || || || || ||| || |||| || |||| Sbjct 1162026 ATGAAGAGTTGATTCCTTCTGAATATTATAGTCTGC-AAGTGTGCGTCCGTCTTCAAGCT 1162084 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 ||||||| || |||| || | ||| ||||| || | || |||||||||| ||||| Sbjct 1162085 GCTTACCAGCGAAAATCAATCTCTGTTGATCAGGTGGAATACCTTCCTTGTCCTGAATTT 1162144 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | | || ||||| | || || || | || || || || || | Sbjct 1162145 TTGCCTTCACATTCTCAATTGTATCAGAAGCTTCAACTTCTAAAGTGATTGTCTTTCCCG 1162204 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||| || ||||| ||||| Sbjct 1162205 TGAGAGTTTTAACGAAAATTTGCAT 1162229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421109676183566