Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq75 203 5e-48 >seq75 Length=5967246 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | ||| || ||||||||||| || || || || ||||| || Sbjct 3098689 GCGAAGCGTCATAGGAAGGTTCTGCGTGATAACATCCAGGGTATTACAAAACCAGCCATT 3098630 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||||||||||| ||||||||| | ||||||||| | || ||||||| | Sbjct 3098629 CGCCGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATTTCTGGATTGATTTACGAAGAGACT 3098570 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| ||||| | ||||| ||| |||||| | ||||||| || ||| || ||| Sbjct 3098569 CGTGGTGTTCTGAAGGTTTTCCTTGAGAACGTTATTCGTGATGCTGTCACCTACACGGAG 3098510 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | || || || || | ||||| |||||||||| |||| ||||||||| Sbjct 3098509 CACGCTAAGAGGAAAACCGTTACTGCTATGGACGTCGTCTATGCTCTGAAGCGTCAAGGC 3098450 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || |||||| ||||| Sbjct 3098449 AGAACTCTGTACGGATTTGGAGGTTAA 3098423 Score = 197 bits (218), Expect = 2e-46 Identities = 204/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | ||||| ||||||||||| |||||||| |||||||||||| Sbjct 1367277 GCAAAGCGTCATAGAAAAGTACTTCGTGATAACATCCAGGGAATCACGAAGCCAGCTATC 1367336 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||||||||| ||||| || | ||||| ||| | || ||||| | | Sbjct 1367337 CGTCGATTGGCTCGTCGTGGTGGTGTCAAACGAATATCTGGCTTGATTTACGAAGAAACT 1367396 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | || || | | ||| || | ||| || || || |||||| Sbjct 1367397 CGTGGTGTTTTGAAAGTTTTTCTGGAAAACGTCATTCGTGACGCAGTCACATACACCGAG 1367456 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||||| ||||| || || | |||||| | || ||||| |||| | ||||| Sbjct 1367457 CACGCTAAACGAAAGACCGTAACAGCTATGGATGTAGTATATGCTCTGAAGAGGCAAGGA 1367516 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 1367517 CGCACGCTCTACGGTTTTGGAGGTTAA 1367543 Score = 104 bits (114), Expect = 4e-18 Identities = 119/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | ||| || ||||| || ||||| ||||| || ||||||||| Sbjct 3101086 GCCAAGCGTCATAGGAAGGTTCTGCGTGATAATATTCAAGGTATCACGAAACCAGCTATC 3101027 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGA--AGAGA 16550 |||| | ||||||| || ||||| ||||| ||| | ||||| || |||| || ||||| Sbjct 3101026 CGTCATTTGGCTCGCCGAGGTGGTGTCAAACGTATTTCTGGTTTAATCTACGAAGAGAGA 3100967 Query 16551 TTCGT-GATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 ||| | |||| | ||| | ||||| ||| |||||| Sbjct 3100966 CCCGTGGGTGTTCTAAAGGTTTTCCTTGAGAACGTTAT 3100929 Score = 102 bits (112), Expect = 1e-17 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||| || ||||||||||||||||| ||||| || || ||||| | | ||| Sbjct 1362502 CTGCGTGATAATATTCAAGGAATCACCAAGCCGGCTATTCGACGACTGGCAAGAAGAGGT 1362561 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || | | ||| ||| | || ||||| | |||| |||||||| | || Sbjct 1362562 GGCGTTAAAAGAATTAGTGGCTTGATTTACGAAGAAACACGTGGAGTTTTGAAAGTATTT 1362621 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||||| | |||||| | ||||| || || || || | || || || Sbjct 1362622 CTTGAAAATGTTATTCGAGATGCTGTTACGTATACAGAACATGCAAAGAGGAAAACCGTG 1362681 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | || ||||||||||| || |||||| | | | || |||||||| Sbjct 1362682 ACAGCGATGGACGTAGTTTATGCATTGAAGCGCCAAGGCAGAACACTCTACGGTTTTGGT 1362741 Query 16694 AGTTAA 16699 ||||| Sbjct 1362742 GGTTAA 1362747 Score = 80.6 bits (88), Expect = 4e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 ||| ||| || ||||||||| |||||||| | |||||||| | | | |||||| | || Sbjct 3100824 TGACGCTGTCACCTATACCGAACACGCTAAGAGGAAGACTGTTATCGCTATGGATGTTGT 3100765 Query 16651 CTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| || |||||||||||||| | | | || |||||||| ||||| Sbjct 3100764 CTACGCTCTGAAACGTCAAGGCAGAACCCTCTACGGTTTTGGCGGTTAA 3100716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79049996213238