Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq284 147 2e-30 seq213 118 1e-21 seq366 113 5e-20 >seq284 Length=1419496 Score = 147 bits (162), Expect = 2e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || |||||||||||||||| ||| |||||||| || || ||||| |||||||||| ||| Sbjct 890235 ATATATGTATCGATTAACAAAGAGTACATTTCTGAGTGCACATTTTCCATTGCAACTTGA 890176 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || || || | || || || || ||||| || || ||||| || || ||| Sbjct 890175 AAGCCATAAAAGCAACGTGCCTCTGTTATTTGCACCTCCTGGCTAAATCGTTCAACAAGA 890116 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || ||||| || || |||||||| || |||| ||| |||||| | | Sbjct 890115 TTTTCATTGACAATTCCATCAGAAGCAGCAAAAAATGCTAATACATGTGATATAAATTTT 890056 Query 93542 TTCTCA 93547 |||||| Sbjct 890055 TTCTCA 890050 Score = 127 bits (140), Expect = 2e-24 Identities = 164/225 (73%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 93111 AACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTT 93170 ||||| | |||| || || | ||||| |||||||| | ||||| | ||||||| | Sbjct 890560 AACCT-CATCTCTAGAAATGAGTTCATTACTGAATGTAAGGCCTGGCATAAGTCCTCTCT 890502 Query 93171 TCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 |||| | |||||| || | ||||||||||||| ||| || ||||||||||| || |||| Sbjct 890501 TCTTTAACCAAAAAATGGCAGCAAAACTACCACTAAAGAAAATACCTTCCACTGCAGCAA 890442 Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 |||| | | |||||||| ||| | || | | | | ||||| ||||| ||||||| Sbjct 890441 ATGCAATTACACGTTCGGGAAAGGTAGCAGTTTCATGATTTATCCAATTTAATGCCCAAT 890382 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 |||||| || || ||| || | |||| || || ||||||| Sbjct 890381 TAGCTTTTCTCGCAACACACGGCAAATTTTCAATCGCATTAAATA 890337 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || ||||| || ||||| || || |||||||| || |||||||||||||||||||| | | Sbjct 889928 TTAGAAAGGTCTACTTCCTCCACTGTCCAAAAGGAGGCTTCTGCTTTTTTGTACATTTGC 889869 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || ||||| | |||| || ||||| | ||||| | | || || |||||||| | Sbjct 889868 CAAATGTCAGGCCATTGGATAGGAAAAACAACAAATCTACGTGGATTTTCTTTTAGCAGT 889809 Query 93701 GGCTCTAGTTGTGG 93714 || |||| || ||| Sbjct 889808 GGTTCTAATTCTGG 889795 >seq213 Length=741248 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 531804 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCAATTGGGAGC 531863 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 531864 GTGGGTTCGAACCCCACACCTGGCAAA 531890 >seq366 Length=1648964 Score = 113 bits (124), Expect = 5e-20 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 1392562 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 1392621 Query 126327 GTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||| | ||||| Sbjct 1392622 GTTCGAACCCCACACTTAGCAAAT 1392645 Score = 113 bits (124), Expect = 5e-20 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 1392755 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 1392814 Query 126327 GTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||| | ||||| Sbjct 1392815 GTTCGAACCCCACACTTAGCAAAT 1392838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556668919689840