Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq394 111 1e-19 seq49 98.7 7e-16 seq65 89.7 4e-13 >seq394 Length=4544675 Score = 111 bits (122), Expect = 1e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||| | |||||||||||||||||| |||||||| | |||| | | ||||| Sbjct 4399698 CAGCAGAGATTAATCTTTGCTGGCAAACAATTAGAAGATGGTAGAACTTTATCAGATTAT 4399757 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||||||||||||||| | ||| |||||||||||||| |||| ||| Sbjct 4399758 AACATTCAGAAGGAATCTACATTACATTTGGTATTACGTTTAAGAGGTGGA 4399808 >seq49 Length=1886280 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | || || | ||||| || || || || | ||| ||||| | Sbjct 1162914 AATGCAAATTTTCGTCAAGACCCTTACGGGAAAGACGATCACTTTAGAAGTTGAAGCTTC 1162855 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || |||| ||||||| ||||| |||||| | || | |||| Sbjct 1162854 AGATACCATCGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGTATTCCACCAGACCA 1162795 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||| | || || ||||| || ||||| |||||| | || | | |||||||| Sbjct 1162794 ACAGAGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACACTCTCTGATTACAA 1162735 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| || ||||| ||||| ||| | ||| | || | ||||| ||| Sbjct 1162734 TATTCAAAAAGAATCAACTCTCCATCTTGTACTTCGACTCCGAGGTGGA 1162686 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || ||||||| | ||||| || || || || | ||| ||||| | Sbjct 1162686 AATGCAAATTTTCGTTAAAACTCTCACGGGAAAGACGATCACTTTAGAAGTTGAAGCTTC 1162627 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| |||||| ||||| |||||| | || | |||| Sbjct 1162626 TGATACAATTGAGAATGTTAAAGCAAAAATCCAAGATAAGGAGGGTATTCCACCAGACCA 1162567 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||| | ||||| ||||| || ||||| |||||| | || | | || || || Sbjct 1162566 ACAGAGATTGATCTTCGCTGGTAAGCAACTTGAAGATGGACGCACACTCTCTGACTATAA 1162507 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| ||||| || |||||| | ||| | || | ||||| ||| Sbjct 1162506 CATTCAGAAAGAATCAACCCTTCATCTTGTACTTCGACTTCGAGGTGGA 1162458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | ||||| ||||| ||||| | ||| ||||| | Sbjct 1162458 AATGCAAATTTTCGTCAAAACCCTTACGGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1162399 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || ||| | | || | ||| ||||||| || || || ||| | ||||| | Sbjct 1162398 TGATACGATTGAGAATGTGAAGGCAAAAATTCAGGACAAGGAAGGTATTCCACCTG---A 1162342 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||||||| | || || ||||| || || || ||||| | || | || || || Sbjct 1162341 TCAACAGAGATTGATTTTCGCTGGAAAGCAGCTTGAAGACGGACGCACACTTGCAGACTA 1162282 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||||||||| ||||| ||| | ||| | || | ||||| ||| Sbjct 1162281 TAATATTCAGAAGGAATCAACTCTCCATCTTGTACTTCGACTCCGAGGTGGA 1162230 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||||| || |||||||| || ||| | || ||||| | Sbjct 1163141 ATGCAGATCTTTGTCAAGACATTGACTGGCAAAACAATAACCCTCGAGGTTGAAGCATCC 1163082 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||||| || || ||||| | || | | || Sbjct 1163081 GATACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATTCCCCCAGATCAG 1163022 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | || ||||||||||||||||| |||||| || ||| | | |||||||| Sbjct 1163021 CAAAGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTCTCTGATTACAAC 1162962 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || || || || ||||| | ||| | || || |||| ||| Sbjct 1162961 ATTCAAAAAGAGTCAACACTTCACCTTGTACTTCGATTGAGAGGTGGA 1162914 >seq65 Length=771584 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || | || || |||||||| ||| |||| |||||| | Sbjct 537581 AATGCAGATCTTTGTCAAGACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAAGCCTC 537640 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | ||||| || ||| || ||||| || | ||| |||| Sbjct 537641 AGACACAATAGAGAACGTTAAGGCCAAGATTCAAGACAAAGAAGGAATCCCTCCCGACCA 537700 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||| |||||||| ||| | | ||||| || Sbjct 537701 GCAGCGTTTGATCTTTGCTGGCAAACAGTTAGAAGATGGGCGCACTCTTTCAGATTATAA 537760 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || |||||||| || || ||| |||| || || | ||||||||| Sbjct 537761 CATCCAAAAGGAATCCACCCTGCATTTGGTGTTGCGACTCCGAGGAGGA 537809 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | |||||| | ||||| |||||||| ||| ||||| || || | Sbjct 538265 AATGCAGATCTTTGTCAAAACACTCACGGGGAAAACCATCACCCTGGAAGTTGAGGCTTC 538324 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | ||||| || ||| || |||||||| | ||| |||| Sbjct 538325 AGACACAATAGATAACGTTAAGGCTAAGATTCAAGACAAAGAGGGAATCCCTCCCGACCA 538384 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | || |||||||||||||| | |||||| ||| | | |||||||| Sbjct 538385 GCAGCGTTTGATATTTGCTGGCAAACAGTTGGAAGATGGGCGCACTCTTTCAGATTACAA 538444 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || || || || || || || |||| || || | ||||||||| Sbjct 538445 CATCCAAAAAGAGTCCACACTGCACTTGGTGTTGCGACTCCGAGGAGGA 538493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358004484168364