Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq49 104 2e-17 seq65 102 7e-17 seq394 100 2e-16 seq68 100 2e-16 >seq49 Length=1886280 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||||| || || ||||| || ||| ||| ||| | || Sbjct 1163141 ATGCAGATCTTTGTCAAGACATTGACTGGCAAAACAATAACCCTCGAGGTTGAAGCATCC 1163082 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||| |||||| | ||| |||||| Sbjct 1163081 GATACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATTCCCCCAGATCAG 1163022 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| ||||||||| | |||||| | ||| | | ||||| ||| Sbjct 1163021 CAAAGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTCTCTGATTACAAC 1162962 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||| || || || ||| | ||| | |||| |||| || || Sbjct 1162961 ATTCAAAAAGAGTCAACACTTCACCTTGTACTTCGATTGAGAGGTGGAAT 1162912 >seq65 Length=771584 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| |||||| | ||||| |||||||| ||| ||| || |||| Sbjct 538265 AATGCAGATCTTTGTCAAAACACTCACGGGGAAAACCATCACCCTGGAAGTTGAGGCTTC 538324 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | ||| || || |||||||||||| | || || || Sbjct 538325 AGACACAATAGATAACGTTAAGGCTAAGATTCAAGACAAAGAGGGAATCCCTCCCGACCA 538384 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || ||||| |||||||| ||||||||| ||| | | ||||| || Sbjct 538385 GCAGCGTTTGATATTTGCTGGCAAACAGTTGGAAGATGGGCGCACTCTTTCAGATTACAA 538444 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||| || || |||||| |||| || || | |||||||| || Sbjct 538445 CATCCAAAAAGAGTCCACACTGCACTTGGTGTTGCGACTCCGAGGAGGAAT 538495 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || || || ||||| | || ||||||||||| ||| || ||| | Sbjct 536210 AAATATGCAGATCTTCGTCAAAACCCTCACAGGTAAAACCATCACCTTGGAGGTAGAAGC 536269 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||||| || | | || | ||| || ||| |||||||| ||| | || || Sbjct 536270 CTCAGACACAATAGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCCGA 536329 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 || ||| | | |||||||| || ||||| ||||||||| | ||| | | ||||| Sbjct 536330 CCAGCAGCGTTTGATCTTTGCTGGGAAACAGTTGGAAGATGGTCGCACTCTTTCAGATTA 536389 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| || || |||||| ||||||| || | |||||||| || Sbjct 536390 CAATATCCAAAAAGAGTCCACACTGCACTTGGTATTGCGACTCCGAGGAGGAAT 536443 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || ||||| | | || |||||||| ||| || || |||| Sbjct 538037 AATGCAGATCTTCGTCAAAACGCTCAATGGGAAAACCATCACCCTGGACGTTGAGGCTTC 538096 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || || | | || ||| || |||| |||||||| ||| | || ||| Sbjct 538097 AGACACAGTAGAGAACCTTAAGGCCAAGATCGTAGACAAAGAAGGAATCCCTTCTGATAT 538156 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| || ||||| ||||||||| | ||| | | |||||||| Sbjct 538157 GCAGCGTTTGATCTTTGCTGGGAAACAGTTGGAAGATGGTCGCACTCTTTCAGATTATAA 538216 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| |||||||| ||||| |||||| | || || || | |||||||| || Sbjct 538217 CATCCAAAAAGAGTCTACACTGCACTTAGTGTTGCGACTCCGAGGAGGAAT 538267 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || || || | || || |||||||| || |||| || |||| Sbjct 536669 AATGCAGATCTTCGTCAAGACGCTCACAGGGAAAACCATCACACTCGAAGTTGAGGCTTC 536728 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | ||| || || |||||||| ||| | || || || Sbjct 536729 AGACACAATAGAAAACGTTAAGGCCAAGATTCAAGACAAAGAAGGAATCCCTCCCGACCA 536788 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 ||| | | |||||||| |||||||||||||||||| | | ||| | | ||||| Sbjct 536789 GCAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGGCGCACACTTT--CAGATTAC 536846 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || |||||||| || || |||||| |||| || || | |||||||| || Sbjct 536847 AATATCCAAAAAGAGTCCACACTGCACTTGGTGTTGCGACTCCGAGGAGGAAT 536899 >seq394 Length=4544675 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||| | |||||||| ||||||||||| |||||| || |||| | | ||| Sbjct 4399695 GATCAGCAGAGATTAATCTTTGCTGGCAAACAATTAGAAGATGGTAGAACTTTATCAGAT 4399754 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||| || |||||||| | || |||||||| | ||| |||| || Sbjct 4399755 TATAACATTCAGAAGGAATCTACATTACATTTGGTATTACGTTTAAGAGGTGG 4399807 >seq68 Length=1848670 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| ||||| || ||||| || |||||||||||||||||| ||| |||| | Sbjct 813114 AAAATGCAGATATTCGTGAAAACTTTGACGGGTAAAACCATTACCCTTGAAGTGGAAGCA 813055 Query 28611 TCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || | || ||||||| || || ||||| ||| | || || Sbjct 813054 TCGGATACTATTGAAAATGTGAAAGCAAAAATTCAG-GATAAAGAAGGAATTCCACCCGA 812996 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||| || | || || ||||| || ||||| || |||||| ||| || | ||||| Sbjct 812995 TCAGCAACGTCTCATTTTTGCTGGAAAACAGTTAGAAGATGGACGTACTCTGTCAGATTA 812936 Query 28730 TAACATTCAAAAAG 28743 |||||||||||||| Sbjct 812935 TAACATTCAAAAAG 812922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425261880737514