Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq49 140 5e-28 seq68 118 2e-21 seq284 96.9 5e-15 >seq49 Length=1886280 Score = 140 bits (154), Expect = 5e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | ||||||||||||||||| |||||||| |||| ||| Sbjct 1161556 AATGCAAATTTTCGTCAAAACCCTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1161497 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || ||||| ||||| || || || || ||||| || ||||| || Sbjct 1161496 TGATACGATTGAGAATGTGAAGGCAAAAATTCAGGACAAGGAGGGCATTCCACCAGACCA 1161437 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| || |||||||| || |||||| | || | || || ||||| Sbjct 1161436 ACAAAGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACACTTTCGGACTATAA 1161377 Query 156002 TATATCCAAA-GAGGCGACGCTTCAT 156026 || || ||| ||| | || |||||| Sbjct 1161376 CAT-TCAAAAGGAGTCAACTCTTCAT 1161352 Score = 134 bits (148), Expect = 2e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | ||||||||||||||||| |||||||| |||| ||| Sbjct 1161328 AATGCAAATTTTCGTCAAAACCCTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1161269 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || ||||| ||||| || || || || ||||| || ||||| || Sbjct 1161268 TGATACGATTGAGAATGTGAAGGCAAAAATTCAGGACAAGGAGGGCATTCCCCCAGATCA 1161209 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||||| || |||||||| || |||||| | || | || || ||||| Sbjct 1161208 GCAAAGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACACTTTCTGACTATAA 1161149 Query 156002 TATATCCAAA-GAGGCGACGCTTCAT 156026 ||| || ||| ||| | || || ||| Sbjct 1161148 TAT-TCAAAAGGAGTCAACTCTCCAT 1161124 Score = 131 bits (144), Expect = 2e-25 Identities = 173/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | |||||||| || || || |||||||| |||| ||| Sbjct 1161100 AATGCAAATTTTCGTCAAAACCCTTACTGGAAAGACGATCACTTTAGAAGTTGAAGCTTC 1161041 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||| || ||| ||||| |||||||| || ||||| || ||||| || Sbjct 1161040 AGATACCATTGAAAATGTTAAAGCAAAAATCCAAGATAAGGAGGGCATTCCCCCAGATCA 1160981 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||||| || ||||||||||| ||||| | || | |||| ||||| Sbjct 1160980 GCAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTTGCAGACTATAA 1160921 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG--TGTAAAATT 156058 ||| || || | || || ||| | || | |||| ||||| || |||||| || Sbjct 1160920 TATTCAGAAGGAATCAACTCTCCATCTTGTACTTCGATTGAGAGGTGGAATGTAAATTT 1160862 Score = 123 bits (136), Expect = 4e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | || |||||||||||||| |||||||| || | ||| Sbjct 1162001 ATGCAAATTTTCGTCAAGACCCTTACCGGAAAAACTATTACTTTAGAAGTTGAGGCTTCA 1161942 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || ||||| |||||||| || || || || ||||| ||| Sbjct 1161941 GATACCATTGAAAATGTAAAGGCAAAAATCCAAGATAAGGAGGGTATTCCACCAGACCAA 1161882 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || |||||||| || |||||| | || | || || |||||| Sbjct 1161881 CAAAGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACACTTTCTGACTATAAT 1161822 Query 156003 ATATCCAAA-GAGGCGACGCTTCAT 156026 || || ||| ||| | || || ||| Sbjct 1161821 AT-TCAAAAGGAGTCAACTCTCCAT 1161798 Score = 120 bits (132), Expect = 4e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || |||||||||||||| |||||||| |||| ||| Sbjct 1162458 AATGCAAATTTTCGTCAAAACCCTTACGGGAAAAACTATTACTTTAGAAGTTGAAGCTTC 1162399 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 1162398 TGATACGATTGAGAATGTGAAGGCAAAAATTCAGGACAAGGAAGGTATTCCACCTGATCA 1162339 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| |||||||||| || || |||||||| ||||| Sbjct 1162338 ACAGAGATTGATTTTCGCTGGAAAGCAGCTTGAAGA 1162303 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || ||||||| | || ||||| || || || |||||||| |||| ||| Sbjct 1162230 AATGCAAATTTTCGTTAAAACTCTCACGGGAAAGACAATCACTTTAGAAGTTGAAGCTTC 1162171 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 1162170 TGATACAATTGAGAATGTGAAGGCAAAAATTCAGGACAAGGAAGGTATTCCACCTGATCA 1162111 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| |||||||||| || ||||||||||| ||||| Sbjct 1162110 ACAGAGATTGATTTTCGCTGGTAAGCAGCTTGAAGA 1162075 Score = 113 bits (124), Expect = 7e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| ||||| || || | || || |||| || Sbjct 1163141 ATGCAGATCTTTGTCAAGACATTGACTGGCAAAACAATAACCCTCGAGGTTGAAGCATCC 1163082 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| ||||| || || || || || || || ||||| || Sbjct 1163081 GATACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATTCCCCCAGATCAG 1163022 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || || || |||||| ||||| | || ||||| || Sbjct 1163021 CAAAGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTCTCTGATTACAAC 1162962 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| | || | |||| ||||| || Sbjct 1162961 ATTCAAAAAGAGTCAACACTTCACCTTGTACTTCGATTGAGAGGTGG 1162915 Score = 107 bits (118), Expect = 3e-18 Identities = 148/206 (72%), Gaps = 12/206 (6%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | ||||| ||||||||||| ||||| || Sbjct 1161774 AATGCAAATTTTCGTCAAAACCCTTACTGGGAAAACTATTACTTTAGA----------TC 1161725 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| || ||| ||||| |||||||| || || || || ||||| || Sbjct 1161724 AGATACCATCGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGTATTCCACCAGACCA 1161665 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| || |||||||| || |||||| | || | || || ||||| Sbjct 1161664 ACAAAGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACACTTTCTGACTATAA 1161605 Query 156002 TATATCCAAA-GAGGCGACGCTTCAT 156026 ||| || ||| ||| | || |||||| Sbjct 1161604 TAT-TCAAAAGGAGTCAACTCTTCAT 1161580 >seq68 Length=1848670 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| ||||| | ||||| ||||| || ||||| ||||| | ||||| |||| Sbjct 813114 AAAATGCAGATATTCGTGAAAACTTTGACGGGTAAAACCATTACCCTTGAAGTGGAAGCA 813055 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| ||| |||||| ||||| || ||||||||||| || || || || Sbjct 813054 TCGGATACTATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAAGGAATTCCACCCGAT 812995 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | | |||| ||| || || ||| | |||||| | ||| | ||||||||| Sbjct 812994 CAGCAACGTCTCATTTTTGCTGGAAAACAGTTAGAAGATGGACGTACTCTGTCAGATTAT 812935 Query 156000 AATAT 156004 || || Sbjct 812934 AACAT 812930 >seq284 Length=1419496 Score = 96.9 bits (106), Expect = 5e-15 Identities = 167/239 (70%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||| | |||| ||||| || |||||||||||||| |||||||| || || | Sbjct 890252 TTTCTTTAGCATCTGCAATATATGTATCGATTAACAAAGAGTACATTTCTGAGTGCACAT 890193 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC---GC 18527 ||||||| || | ||||| | |||||| | | ||||| | ||| | ||| || Sbjct 890192 TTTCCATTGCAACTTGAAAGCCATAAAAGCAACGTGCCTCTGTTATTTGCACCTCCTGGC 890133 Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587 | ||||| ||| || | ||| ||||| || || || |||| || || |||||||| | Sbjct 890132 T---AAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAAGCAGCAAAAAATGCTA 890076 Query 18588 AAACATATTTAATGAAATGTTTTTCA-TTATCCTTGAGATTGTTCCATTCATCTATATC 18645 | |||| | || || | ||| ||| | || || | | ||||||| ||| || ||| Sbjct 890075 ATACATGTGATATAAATTTTTTCTCACTGATAGTT-AAACTGTTCCAGTCAAATAAATC 890018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731619815205600