Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq97 96.9 1e-14 seq400 86.0 2e-11 seq27 86.0 2e-11 >seq97 Length=1998389 Score = 96.9 bits (106), Expect = 1e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || ||| | |||||||||||||| || |||||||| | | ||| |||| || || || Sbjct 346033 CTCTTTCTTCCAACAGCATCAATCTCATCAATGAATAATATACAGGGAGCATGTTTTCGG 345974 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || | ||| | || | || | |||| |||| ||||||| ||||||| | |||| Sbjct 345973 GCCATGGAAAACATGTCACGAACCCTTGATGGACCAACACCAACAAACATTTCCAAAAAT 345914 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || || | || || ||| || | |||||||||||| || || ||| | || | Sbjct 345913 TCCGATCCCGACACACTAATAAAAGGTACATTTGCTTCTCCAGCAGTAGCCTTAGCTAAT 345854 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | ||| ||||| || || ||||| || Sbjct 345853 AATGTTTTACCAGTACCCGGTGGACC 345828 >seq400 Length=2387259 Score = 86.0 bits (94), Expect = 2e-11 Identities = 184/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||||||||| || |||||| | || |||||||| ||| Sbjct 1053864 TCCATAGCCTTTATCAGACGACGCTGAATGTATCCAGTTTCTGCAGTCTTTACAGCAGTA 1053923 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| |||||||| || || | | || ||| | || Sbjct 1053924 TCGATAAGACCCTCACGACCTCCCATAGCGTGAAAATAAAATTCAGACGGAGTCAAACCG 1053983 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | ||| |||| ||||| || | | ||| || || ||||||| || | Sbjct 1053984 GCAAGATACGAGTTCTCGACGAATCCTCTGGACTCAGGACCGTAATCGTC---TTTAATG 1054040 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| || || || | | ||| |||| || || || || || ||||| || Sbjct 1054041 AAATGTGGCAACGTTCTCTTGCGAAAACCGAATGGAATTCGTTTACCTTCTACGTTTTGT 1054100 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | ||| | || || ||||| Sbjct 1054101 TGACCGACACAAGCAATAACTTGAGAGATATT 1054132 >seq27 Length=1401505 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||| | |||| | |||||| || ||||||||||| | || | ||| || || | Sbjct 964708 TAGCACCATATCCAATTAAACAATCTCGCTCCATTTCACCTAATCGTAAACCTCCCTCTT 964767 Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 | | | ||| | || |||||| ||||| |||| ||| || || |||||||| || Sbjct 964768 TGGCACGACCTTCTGTTGGTTGACGCGTTAATACAGCTCTCGGTCCTCGAGCACGAGCAT 964827 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 |||||||||| |||||||| || ||| | |||||| Sbjct 964828 GCATTTTATCTTGTACCATATGTTTTAGTTTTTGATAATA 964867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471297769661742