Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13]
27,566 sequences; 296,954,667 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq148 114 2e-20
seq28 102 1e-16
>seq148
Length=2826987
Score = 114 bits (126), Expect = 2e-20
Identities = 275/409 (67%), Gaps = 13/409 (3%)
Strand=Plus/Plus
Query 142800 TCTAGAATAAAAATATTGATAGGTATAACTGGCAGCGTAGCTACTGTTAAGTTACCTCAT 142859
||||| | || || || || ||| ||||| || ||||| || |||| ||||| ||
Sbjct 1458998 TCTAGGAAGAAGATTTTAATTGGTTGTACTGGTAGTGTAGCCACAATTAAATTACCACAA 1459057
Query 142860 CTAATAAAAGAATTAACTCGTTTAGAA-AATATAGAATTAAGAATAGTCGCTACAGAAAA 142918
|| || | ||||| || |||| ||| | ||| ||||| |||| | ||| |||||
Sbjct 1459058 TTAGTACAGAAATTATGTC----AGAACAATTTGGAAGTAAGAGTAGTGGTTACTGAAAA 1459113
Query 142919 TGCTATGAAATTT---ACAGAC-CAAAA--AACTTTAGGTATTCCTATTTATACAGATAA 142972
|||| | | || | ||| || || | || | | |||| | | | || |
Sbjct 1459114 AGCTAAGCATTTCTTAAAAGAGGCAGAATTACCTACAAGAATTCAAGTATTGTCTGACAC 1459173
Query 142973 AGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAGGAG 143032
|| |||||| || | ||| || | | | |||||| || |||||||| || |||||
Sbjct 1459174 AGTAGAGTGGGCTGCCTGGCAAGATAGAGGCGATCCTGTGTTGCATATTGA-CTTAGTTA 1459232
Query 143033 A-TGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCA 143091
| ||||| ||| | ||| | || || || ||| || || || | | || |||||||
Sbjct 1459233 AGTGGGCTGATTTATTTTTAATTGCTCCATTAGATGCTAACACCCTTGGCAAGATAGCCA 1459292
Query 143092 ACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTC 143151
||||||||||||||| || | || | | | | | | ||||||||| ||||||
Sbjct 1459293 GTGGTATATGCGATAATATATTGACCTGTGTCGCACGTGCCTGGGATCCTTCAAAACCTT 1459352
Query 143152 TTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200
| || || ||||| |||||||||| |||||||||||||| ||||
Sbjct 1459353 TGATCTTCTGTCCTGCTATGAATACAAAAATGTGGGAACATCCAGTTAC 1459401
>seq28
Length=2648693
Score = 102 bits (112), Expect = 1e-16
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 182968 AGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGG 183027
|| || || || |||||| | || ||| | ||| | | || || ||||| | |||||
Sbjct 1050873 AGGAAATACATATATTCTTTAAATCAATTAGAAGACTCTGAGACTCATGATGATTTATGG 1050814
Query 183028 AATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAC 183087
||||||| ||| || ||| | | |||||| |||||| | || ||| |||||||
Sbjct 1050813 AATGCATGTCAATATCAAATGGTTGCAATAGGAAAGATGCATGGATTCTTAAGAATGTAT 1050754
Query 183088 TGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATC 183147
||||| || || ||| | |||||||| ||| || |||| |||||||| | |
Sbjct 1050753 TGGGCAAAGAAAATATTAGAATGGACTGAAACACCTGAAGTTGCTTTGAAGTGGGCCAAT 1050694
Query 183148 TATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201
||| | || ||||||||| |||| ||| |||||||| || || ||||||
Sbjct 1050693 TATTTAAATAATAAGTACAGTATAGATGGTTGTGATCCTAATGGTTATGTAGGT 1050640
Score = 91.5 bits (100), Expect = 3e-13
Identities = 85/107 (79%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256
||||||||||||||||||| ||||| |||| ||| | |||| |||||| ||||
Sbjct 1050573 TAGGTTGTATGTGGTCTATATGCGGTGTACATGATCAGGGTTGGAGAGAAAGGGAAATAT 1050514
Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTT 183303
||||||| |||||||| ||||||||||| | | ||| |||||| ||
Sbjct 1050513 TTGGAAAAATAAGATACATGAATTATGAAGGATGTAA-AAGAAAATT 1050468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903099907085760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |