Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq148 114 2e-20 seq28 102 1e-16 >seq148 Length=2826987 Score = 114 bits (126), Expect = 2e-20 Identities = 275/409 (67%), Gaps = 13/409 (3%) Strand=Plus/Plus Query 142800 TCTAGAATAAAAATATTGATAGGTATAACTGGCAGCGTAGCTACTGTTAAGTTACCTCAT 142859 ||||| | || || || || ||| ||||| || ||||| || |||| ||||| || Sbjct 1458998 TCTAGGAAGAAGATTTTAATTGGTTGTACTGGTAGTGTAGCCACAATTAAATTACCACAA 1459057 Query 142860 CTAATAAAAGAATTAACTCGTTTAGAA-AATATAGAATTAAGAATAGTCGCTACAGAAAA 142918 || || | ||||| || |||| ||| | ||| ||||| |||| | ||| ||||| Sbjct 1459058 TTAGTACAGAAATTATGTC----AGAACAATTTGGAAGTAAGAGTAGTGGTTACTGAAAA 1459113 Query 142919 TGCTATGAAATTT---ACAGAC-CAAAA--AACTTTAGGTATTCCTATTTATACAGATAA 142972 |||| | | || | ||| || || | || | | |||| | | | || | Sbjct 1459114 AGCTAAGCATTTCTTAAAAGAGGCAGAATTACCTACAAGAATTCAAGTATTGTCTGACAC 1459173 Query 142973 AGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAGGAG 143032 || |||||| || | ||| || | | | |||||| || |||||||| || ||||| Sbjct 1459174 AGTAGAGTGGGCTGCCTGGCAAGATAGAGGCGATCCTGTGTTGCATATTGA-CTTAGTTA 1459232 Query 143033 A-TGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCA 143091 | ||||| ||| | ||| | || || || ||| || || || | | || ||||||| Sbjct 1459233 AGTGGGCTGATTTATTTTTAATTGCTCCATTAGATGCTAACACCCTTGGCAAGATAGCCA 1459292 Query 143092 ACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTC 143151 ||||||||||||||| || | || | | | | | | ||||||||| |||||| Sbjct 1459293 GTGGTATATGCGATAATATATTGACCTGTGTCGCACGTGCCTGGGATCCTTCAAAACCTT 1459352 Query 143152 TTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 | || || ||||| |||||||||| |||||||||||||| |||| Sbjct 1459353 TGATCTTCTGTCCTGCTATGAATACAAAAATGTGGGAACATCCAGTTAC 1459401 >seq28 Length=2648693 Score = 102 bits (112), Expect = 1e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 182968 AGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGG 183027 || || || || |||||| | || ||| | ||| | | || || ||||| | ||||| Sbjct 1050873 AGGAAATACATATATTCTTTAAATCAATTAGAAGACTCTGAGACTCATGATGATTTATGG 1050814 Query 183028 AATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAC 183087 ||||||| ||| || ||| | | |||||| |||||| | || ||| ||||||| Sbjct 1050813 AATGCATGTCAATATCAAATGGTTGCAATAGGAAAGATGCATGGATTCTTAAGAATGTAT 1050754 Query 183088 TGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATC 183147 ||||| || || ||| | |||||||| ||| || |||| |||||||| | | Sbjct 1050753 TGGGCAAAGAAAATATTAGAATGGACTGAAACACCTGAAGTTGCTTTGAAGTGGGCCAAT 1050694 Query 183148 TATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201 ||| | || ||||||||| |||| ||| |||||||| || || |||||| Sbjct 1050693 TATTTAAATAATAAGTACAGTATAGATGGTTGTGATCCTAATGGTTATGTAGGT 1050640 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 ||||||||||||||||||| ||||| |||| ||| | |||| |||||| |||| Sbjct 1050573 TAGGTTGTATGTGGTCTATATGCGGTGTACATGATCAGGGTTGGAGAGAAAGGGAAATAT 1050514 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTT 183303 ||||||| |||||||| ||||||||||| | | ||| |||||| || Sbjct 1050513 TTGGAAAAATAAGATACATGAATTATGAAGGATGTAA-AAGAAAATT 1050468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903099907085760