Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq966 143 6e-29 seq66 102 2e-16 seq59 89.7 1e-12 seq400 86.0 1e-11 seq165 84.2 5e-11 >seq966 Length=245293 Score = 143 bits (158), Expect = 6e-29 Identities = 124/151 (82%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 ||||||||||||||||| | |||||| || ||| ||||| ||||||| ||||||||| Sbjct 130617 TTCAATAGGCAACCATCTTTACATAAATTGAGTATTATGGCACATAAAGCAAAAGTATTA 130676 Query 305396 TCTGGATTG-ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 | || | |||||| |||| |||| | ||| |||||| ||||||||||| |||||||| Sbjct 130677 GAT-CATAGAACATTTAGATTTAATGAATGTGTTTGTACTCCTTATAATGCTGATTTTGA 130735 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| |||||||||||| | ||| |||||||| Sbjct 130736 TGGTGATGAAATGAATTTACATTTACCTCAA 130766 >seq66 Length=2158695 Score = 102 bits (112), Expect = 2e-16 Identities = 179/256 (70%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 279838 TAATTATGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCG 279897 |||||||||| | || ||||| ||| || | || |||||||| |||||| ||| | Sbjct 994615 TAATTATGATAATGTGCGATCTATACCTAATATGATCGATGGTTTCAAACCTGGCCAGAG 994674 Query 279898 TAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGG--AAATTCGTGTTGCTCAG 279955 || | | | | |||||| ||| | || | |||| | || | || || || Sbjct 994675 GAAAGTGGTGTATACTTGTTTAAAACGTAAC--GATAAACGTGAAGTGAAAGTGGCACAA 994732 Query 279956 TTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGT 280015 ||||| |||| |||| | |||||| ||| |||||||| ||||||| |||||| | | Sbjct 994733 TTAGCTGGTTCTGTTGCTGAACATTCAGCGTATCATCATGGTGAAGTTTCTCTT-ATGTC 994791 Query 280016 G-CTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACC 280074 | ||||| | |||||| ||| ||||| | | || ||| ||||| | ||| ||| Sbjct 994792 GACTATTATTAATCTTGCACAAAATTTTGTAGGAAGTAATAACATAAATATACTTCAACC 994851 Query 280075 AAATGGTCAATTTGGT 280090 |||||||||||||||| Sbjct 994852 AAATGGTCAATTTGGT 994867 >seq59 Length=4191719 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 111057 CAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAAT 111116 ||||||||||| ||||||||||| || | ||||||||||| ||||| ||||| ||| Sbjct 763867 CAAGTTGAAACAGGAACTCCTTACATGCTTTATAAAGATCACTGCAATCGTAAATCAAAT 763926 Query 111117 CAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || ||| |||||||||| |||| ||| ||||| ||| Sbjct 763927 CATCAAAATATAGGAACAATCAAGTGTAGCAATTTATGC 763965 >seq400 Length=2387259 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 8/156 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | ||||| | |||| |||||| |||||||| ||| | ||| ||||| ||| Sbjct 1055098 TTTAATCGTCAACCGACTTTGCACAAAATGAGTATGATGGGTCACAGAGTGAAAGTTTTA 1055039 Query 305396 TC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGCGGATTT 305451 | |||| | ||||| || | ||| | || ||||| || |||||||| ||||| Sbjct 1055038 CCATGGAGT-ACATTCCGTATGAATCTTAGC---TGTACCTCACCGTATAATGCCGATTT 1054983 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||| || |||||||||||| |||| ||||| || || Sbjct 1054982 TGACGGCGATGAAATGAATTTGCACGTACCACAGTC 1054947 >seq165 Length=882089 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 72220 GTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCT 72279 ||||| ||||| || | ||| | ||||||||| | || |||||||||| | ||| Sbjct 61920 GTAATAAAGAACTGGCTGCCATTAGTATCAGGACCAGCATTTGCCATAGAAAGAATACCA 61861 Query 72280 GCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATATAC-TTTG 72338 | ||| | |||||| || ||||| |||||||| | ||| || |||||| || ||| Sbjct 61860 GGTTCAGTATGCTTCAAAAAGAAGTTCTCATCATTAAATTTTGTTCCATAAATGGATTTT 61801 Query 72339 ACCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTAC 72398 || || | |||| | ||| | |||||||||||| ||| ||||| ||| || Sbjct 61800 CCCCCAG-TGCCATTATGGTTAGTGAAATCACCTCCTTGGCACATGAAATTTGGAATCAC 61742 Query 72399 TCTATGGAAA 72408 |||||| ||| Sbjct 61741 TCTATGAAAA 61732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186393630328926