Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq49 127 2e-24 seq284 96.9 3e-15 seq68 96.9 3e-15 >seq49 Length=1886280 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || ||||| || || ||| | || || |||| || ||||| Sbjct 1163142 CATGCAGATCTTTGTCAAGACATTGACTGGCAAAACAATAACCCTCGAGGTTGAAGCATC 1163083 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || || | || || ||||||| || || ||||| || || || ||||| Sbjct 1163082 CGATACAATTGAAAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATTCCCCCAGATCA 1163023 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| | |||| | ||||||||||| ||||||| |||| || |||||||| Sbjct 1163022 GCAAAGATTGATTTTTGCTGGCAAACAACTTGAAGATGGAAGAACACTCTCTGATTACAA 1162963 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||||| || || |||| | || | |||||||||| |||| Sbjct 1162962 CATTCAAAAAGAGTCAACACTTCACCTTGTACTTCGATTGAGAGGTGGAA 1162913 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || ||||| ||||||| | ||||| ||||| Sbjct 1162913 ATGCAAATTTTCGTCAAGACCCTTACGGGAAAGACGATCACTTTAGAAGTTGAAGCTTCA 1162854 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| ||||||| ||||| |||||||| || || || || Sbjct 1162853 GATACCATCGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGTATTCCACCAGACCAA 1162794 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| || || || ||||| ||||||| | | || ||||||||| Sbjct 1162793 CAGAGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACACTCTCTGATTACAAT 1162734 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||||||||| || Sbjct 1162733 ATTCAAAAAGAATCAAC 1162717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || ||||| ||||||| | ||||| ||||| Sbjct 1161099 ATGCAAATTTTCGTCAAAACCCTTACTGGAAAGACGATCACTTTAGAAGTTGAAGCTTCA 1161040 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| |||||| ||||| ||||| || || || |||||| Sbjct 1161039 GATACCATTGAAAATGTTAAAGCAAAAATCCAAGATAAGGAGGGCATTCCCCCAGATCAG 1160980 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || || || || ||||| | | | | || || ||| Sbjct 1160979 CAAAGATTGATTTTCGCTGGTAAGCAGCTTGAAGACGGACGCACACTTGCAGACTATAAT 1160920 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| || ||||| || | ||| | || | |||||||||| |||| Sbjct 1160919 ATTCAGAAGGAATCAACTCTCCATCTTGTACTTCGATTGAGAGGTGGAA 1160871 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || |||||| | || || | ||||| ||||| Sbjct 1161327 ATGCAAATTTTCGTCAAAACCCTTACTGGAAAAACTATTACTTTAGAAGTTGAAGCTTCT 1161268 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || ||||||| || || ||||| || || || |||||| Sbjct 1161267 GATACGATTGAGAATGTGAAGGCAAAAATTCAGGACAAGGAGGGCATTCCCCCAGATCAG 1161208 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| || || || ||||| ||||||| | | | || || ||| Sbjct 1161207 CAAAGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGACGCACACTTTCTGACTATAAT 1161148 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| || || || | ||| | || | || | ||||||||| Sbjct 1161147 ATTCAAAAGGAGTCAACTCTCCATCTTGTACTTCGACTCCGAGGAGGAA 1161099 >seq284 Length=1419496 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 110135 CCCAATTCGAATAGCAATCGATCCGCCACAAATTCAATATACTCGCACATGGACTGTAC- 110193 || ||||| | ||||||| ||||| |||||||||||||| | ||||||| | | ||| Sbjct 890869 CCTAATTCTACAAGCAATCTGTCCGCAACAAATTCAATATATTGGCACATG-AGTTTACA 890811 Query 110194 GTTCATGCCTAACATGGCAACTGGTAGAGCGGTAGTaaaaaaaTCCTTTTCAATGTCGAC 110253 ||||||||||| ||| |||| |||| |||| ||| ||||| || | |||||| | ||| Sbjct 890810 GTTCATGCCTATCATTTCAACGGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATTTGGAC 890751 Query 110254 AGCCTCT 110260 || ||| Sbjct 890750 CGCGTCT 890744 >seq68 Length=1848670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| || || || ||| | || || | ||||| ||||| Sbjct 813115 CAAAATGCAGATATTCGTGAAAACTTTGACGGGTAAAACCATTACCCTTGAAGTGGAAGC 813056 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||||| || | || ||| ||||||| |||||||| || || || ||||| Sbjct 813055 ATCGGATACTATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAAGGAATTCCACCCGA 812996 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGAT 25348 ||||||| | ||||||| | || ||||| | ||||||| | | ||||| ||| Sbjct 812995 TCAGCAACGTCTCATTTTTGCTGGAAAACAGTTAGAAGATGGACGTACTCTGTCA--GAT 812938 Query 25349 TACAATATTCAAAAAG 25364 || || |||||||||| Sbjct 812937 TATAACATTCAAAAAG 812922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444941031597120