Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq400 145 6e-30 seq284 105 5e-18 seq151 102 6e-17 >seq400 Length=2387259 Score = 145 bits (160), Expect = 6e-30 Identities = 202/282 (72%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| ||| || |||||||||| || || ||||| |||||||||| || || || Sbjct 452435 AATTGGTGGACTGGATAAAGAGTTTAGTGCTATTTTTCGAAGAGCATTTGCATCACGAGT 452494 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 |||| | |||| | ||| ||||||||||||||||||||| ||| |||| ||||| Sbjct 452495 TTTTCCGCCAGAGATTGTTACACAATTGGGATGTAAACATGTAAAAGGAATTTTACTTTA 452554 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACT---TAGTAAATTACTTAC 19418 ||| || || ||| || ||||||||||| || || || | | || ||| | | Sbjct 452555 TGGTCCTCCTGGTACAGGCAAAACATTAATGGCACGACAAATAGGCACTATGTTAAATGC 452614 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 | | ||||| ||||| || ||||| ||| |||| || |||||||||| || || Sbjct 452615 TAGAGAACCT---AAAATCGTCAATGGCCCTCAAATTTTGGATAAATATGTTGGGGAAAG 452671 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGA 19520 |||| ||| | | | || |||||||| |||||||| || Sbjct 452672 TGAAGCTAATATTAGGAGATTATTTGCTGATGCTGAAGACGA 452713 Score = 102 bits (112), Expect = 6e-17 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 19534 GGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAA 19593 |||| ||| ||| ||||| || || || | || ||| | || || || ||||| Sbjct 452810 GGGCCCAATAGTGGATTGCATATCATTATTTTTGACGAAATTGATGCTATTTGTAAATCT 452869 Query 19594 AGAGGTTC---TGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCA 19647 ||||| || || |||| ||||| ||||| || ||||| |||||| | || || Sbjct 452870 CGAGGTAGCGTTGCTGGAAATACAGGAGTTCATGATACCGTTGTAAATCAATTACTTGCA 452929 Query 19648 AAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTG 19707 ||| | || ||||| | ||| | ||||||||| | |||||||| |||||||||||| Sbjct 452930 AAAATTGATGGTGTAGAACAATTAAATAATATTCTTGTTATTGGTATGACTAATAGAAGA 452989 Query 19708 GAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGA 19748 || | || || |||||||||||||| ||| | ||||| Sbjct 452990 GATATGATTGATGAAGCCTTATTACGACCTGGTAGATTGGA 453030 >seq284 Length=1419496 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || ||| | |||||||| || || || ||||||||||| || || || |||||| Sbjct 890051 GAGAAAAAATTTATATCACATGTATTAGCATTTTTTGCTGCTTCTGATGGAATTGTCAAT 890110 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 |||||| | ||| || ||| || || || ||| || |||| ||||| || |||||| Sbjct 890111 GAAAATCTTGTTGAACGATTTAGCCAGGAGGTGCAAATAACAGAGGCACGTTGCTTTTAT 890170 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || |||||| |||| || |||||| | || || ||||||||| | | | || ||||| Sbjct 890171 GGCTTTCAAGTTGCAATGGAAAATGTGCACTCAGAAATGTACTCTTTGTTAATCGATACA 890230 Query 44009 TACATCAAAGATG 44021 || || ||||| Sbjct 890231 TATATTGCAGATG 890243 Score = 98.7 bits (108), Expect = 8e-16 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | ||||||||| ||| ||||| || ||||| || |||| | |||||| |||| Sbjct 889811 TGCTAAAAGAAAATCCACGTAGATTTGTTGTTTTTCCTATCCAATGGCCTGACATTTGGC 889870 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGA 43785 ||||||||||||||||| | || || |||||||||| || ||||| || Sbjct 889871 AAATGTACAAAAAAGCAGAAGCCTCCTTTTGGACAGTGGAGGAAGTAGA 889919 >seq151 Length=1873176 Score = 102 bits (112), Expect = 6e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||| | || || || |||| ||| ||| |||||||| || ||||||| ||| | || Sbjct 1665549 ATGGCACTACCCCCATGCCATT-GTTTTGTTCAGTTTTATGTGAGCAATGGAGAATTATC 1665491 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 |||||| | ||||||||| | || ||||| || || || || ||||| ||||| Sbjct 1665490 ATGTCAGCTTTATCAAAGAAGCGCCGATATGGGTCTTGGTGTACCATTTAATATAGCATC 1665431 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 ||| |||| | || || ||| | ||||||||||| |||||||| Sbjct 1665430 CTATTCTCTATTAACTTACATGTTGGCACACGTTACAAATTTAAA 1665386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397322470433830