Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13]
27,566 sequences; 296,954,667 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq400 145 6e-30
seq284 105 5e-18
seq151 102 6e-17
>seq400
Length=2387259
Score = 145 bits (160), Expect = 6e-30
Identities = 202/282 (72%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301
|||||| ||| || |||||||||| || || ||||| |||||||||| || || ||
Sbjct 452435 AATTGGTGGACTGGATAAAGAGTTTAGTGCTATTTTTCGAAGAGCATTTGCATCACGAGT 452494
Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361
|||| | |||| | ||| ||||||||||||||||||||| ||| |||| |||||
Sbjct 452495 TTTTCCGCCAGAGATTGTTACACAATTGGGATGTAAACATGTAAAAGGAATTTTACTTTA 452554
Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACT---TAGTAAATTACTTAC 19418
||| || || ||| || ||||||||||| || || || | | || ||| | |
Sbjct 452555 TGGTCCTCCTGGTACAGGCAAAACATTAATGGCACGACAAATAGGCACTATGTTAAATGC 452614
Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478
| | ||||| ||||| || ||||| ||| |||| || |||||||||| || ||
Sbjct 452615 TAGAGAACCT---AAAATCGTCAATGGCCCTCAAATTTTGGATAAATATGTTGGGGAAAG 452671
Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGA 19520
|||| ||| | | | || |||||||| |||||||| ||
Sbjct 452672 TGAAGCTAATATTAGGAGATTATTTGCTGATGCTGAAGACGA 452713
Score = 102 bits (112), Expect = 6e-17
Identities = 156/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 19534 GGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAA 19593
|||| ||| ||| ||||| || || || | || ||| | || || || |||||
Sbjct 452810 GGGCCCAATAGTGGATTGCATATCATTATTTTTGACGAAATTGATGCTATTTGTAAATCT 452869
Query 19594 AGAGGTTC---TGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCA 19647
||||| || || |||| ||||| ||||| || ||||| |||||| | || ||
Sbjct 452870 CGAGGTAGCGTTGCTGGAAATACAGGAGTTCATGATACCGTTGTAAATCAATTACTTGCA 452929
Query 19648 AAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTG 19707
||| | || ||||| | ||| | ||||||||| | |||||||| ||||||||||||
Sbjct 452930 AAAATTGATGGTGTAGAACAATTAAATAATATTCTTGTTATTGGTATGACTAATAGAAGA 452989
Query 19708 GAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGA 19748
|| | || || |||||||||||||| ||| | |||||
Sbjct 452990 GATATGATTGATGAAGCCTTATTACGACCTGGTAGATTGGA 453030
>seq284
Length=1419496
Score = 105 bits (116), Expect = 5e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888
|| ||| | |||||||| || || || ||||||||||| || || || ||||||
Sbjct 890051 GAGAAAAAATTTATATCACATGTATTAGCATTTTTTGCTGCTTCTGATGGAATTGTCAAT 890110
Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948
|||||| | ||| || ||| || || || ||| || |||| ||||| || ||||||
Sbjct 890111 GAAAATCTTGTTGAACGATTTAGCCAGGAGGTGCAAATAACAGAGGCACGTTGCTTTTAT 890170
Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008
|| |||||| |||| || |||||| | || || ||||||||| | | | || |||||
Sbjct 890171 GGCTTTCAAGTTGCAATGGAAAATGTGCACTCAGAAATGTACTCTTTGTTAATCGATACA 890230
Query 44009 TACATCAAAGATG 44021
|| || |||||
Sbjct 890231 TATATTGCAGATG 890243
Score = 98.7 bits (108), Expect = 8e-16
Identities = 87/109 (80%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736
|||| | ||||||||| ||| ||||| || ||||| || |||| | |||||| ||||
Sbjct 889811 TGCTAAAAGAAAATCCACGTAGATTTGTTGTTTTTCCTATCCAATGGCCTGACATTTGGC 889870
Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGA 43785
||||||||||||||||| | || || |||||||||| || ||||| ||
Sbjct 889871 AAATGTACAAAAAAGCAGAAGCCTCCTTTTGGACAGTGGAGGAAGTAGA 889919
>seq151
Length=1873176
Score = 102 bits (112), Expect = 6e-17
Identities = 123/165 (75%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTC 41107
|||||| | || || || |||| ||| ||| |||||||| || ||||||| ||| | ||
Sbjct 1665549 ATGGCACTACCCCCATGCCATT-GTTTTGTTCAGTTTTATGTGAGCAATGGAGAATTATC 1665491
Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167
|||||| | ||||||||| | || ||||| || || || || ||||| |||||
Sbjct 1665490 ATGTCAGCTTTATCAAAGAAGCGCCGATATGGGTCTTGGTGTACCATTTAATATAGCATC 1665431
Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212
||| |||| | || || ||| | ||||||||||| ||||||||
Sbjct 1665430 CTATTCTCTATTAACTTACATGTTGGCACACGTTACAAATTTAAA 1665386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397322470433830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |