Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq65 113 4e-20 >seq65 Length=771584 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||| || || || ||| ||| ||||| || |||||||| | |||||| || | Sbjct 538024 CGCAACACTAAGTGCAGTGTGGACTCCTTTTGGATGTTATAATCTGAAAGTGTGCGCCCA 537965 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||||||| ||||| || | |||||||||||||| || | | |||||| Sbjct 537964 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATTCCTTCTTTG 537905 Query 39190 TCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 | | ||| | | | | | || || | | || || | ||| ||||||| ||||| Sbjct 537904 T-CTTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAAGCCTCAACGTCCAGGGTGAT 537846 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||||||| |||||||| ||||| Sbjct 537845 GGTTTTCCCCGTGAGCGTTTTGACAAAGATCTGCAT 537810 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || |||||||| || || ||| ||||||||| || || ||||| | | Sbjct 538492 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATGTTGTAATCTGAA 538433 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | ||||||||| |||||||| | |||||||||||||| || Sbjct 538432 AGAGTGCGCCCATCTTCCAACTGTTTGCCAGCAAATATCAAACGCTGCTGGTCGGGAGGG 538373 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | | |||||||| | ||| | | | | | || | | | || || | ||| || Sbjct 538372 ATTCCCTCTTTGT-CTTGAATCTTAGCCTTAACGTTATCTATTGTGTCTGAAGCCTCAAC 538314 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||| ||||| || ||||| |||||||| ||||| Sbjct 538313 TTCCAGGGTGATGGTTTTCCCCGTGAGTGTTTTGACAAAGATCTGCAT 538266 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || |||||||| || || ||| ||| ||||| || || ||||| | | Sbjct 538720 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCCTTTTGGATGTTGTAATCTGAA 538661 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || | ||| || || ||||| || |||||||||||||| | || Sbjct 538660 AGAGTGCGTCCATCTTCCAACTGCTTCCCAGCAAAGATCAGACGCTGCTGGTCAGAAGGG 538601 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| | |||||| ||| | || | | || || | ||| || Sbjct 538600 ATTCCTTCTTTGTCTACGATTTTGGCTTTAACGTTCTCTATTGTGTCTGAAGCCTCAACT 538541 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||| ||||| ||||| || || ||||| ||||| Sbjct 538540 TCCAGGGTGATGGTTTTCCCCGTGAGCGTCTTGACGAAGATCTGCAT 538494 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || |||||||| || || ||| ||||||||| ||||| ||||| | | Sbjct 537352 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATATTGTAATCTGAA 537293 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | |||||||| ||||| || | |||||||||||||| || Sbjct 537292 AGGGTGCGCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 537233 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||||| | ||| | | | | | || | | | || || | ||| || Sbjct 537232 ATACCTTCTTTGT-CTTGAATCTTGGCCTTAACGTTTTCTATTGTGTCTGAAGCCTCAAC 537174 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| ||||||||||| ||||| ||||| ||||| Sbjct 537173 TTCGAGTGTGATGGTTTTCCCCGTCAGCGTCTTAACGAAGATCTGCAT 537126 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || |||||||| || || || |||||| || || || ||||| | | Sbjct 538948 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTCGACTCTTTCTGGATGTTGTAATCTGAA 538889 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || |||||||| || ||||| || | |||||||||||| | || Sbjct 538888 AGAGTGCGACCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGG 538829 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||||| | ||| | | | || | || || | | || || | ||| || Sbjct 538828 ATTCCTTCTTTGT-CTTGAATCTTGGCTTTAACGTTCTCTATTGTGTCTGAAGCCTCAAC 538770 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||| ||||||||||| || |||||||| ||||| Sbjct 538769 TTCCAGGGTGATGGTTTTCCCCGTCAGCGTCTTGACAAAGATCTGCAT 538722 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || |||||||| || || ||| ||||||||| || || ||||| | | Sbjct 537580 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATGTTGTAATCTGAA 537521 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | ||||||||| ||||| || | |||||||||||||| || Sbjct 537520 AGAGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATTAAACGCTGCTGGTCGGGAGGG 537461 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||||| | ||| | | | | | || || | | || || | || || Sbjct 537460 ATTCCTTCTTTGT-CTTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAGGCTTCTAC 537402 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||| || || ||||| || |||||||| ||||| Sbjct 537401 CTCCAAGGTGATGGTTTTCCCTGTGAGCGTCTTGACAAAGATCTGCAT 537354 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || ||||||||||| || ||| || ||||| || |||||||| | | Sbjct 537808 CCTCCTCGGAGTCGCAACACCAAATGCAGGGTGGATTCCTTTTGGATGTTATAATCTGAA 537749 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | ||||||||| ||||| || | |||||||||||||| || Sbjct 537748 AGAGTGCGCCCATCTTCTAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 537689 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||||| | ||| | | | | | || || | | || || | || || Sbjct 537688 ATTCCTTCTTTGT-CTTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAGGCTTCTAC 537630 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| |||| || || ||||| || |||||||| ||||| Sbjct 537629 CTCCAAGGTGATGGTTTTCCCTGTGAGCGTCTTGACAAAGATCTGCAT 537582 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || || ||||| || || ||| ||||||||| ||||| ||||| | | Sbjct 536440 CCTCCTCGGAGTCGCAATACCAAGTGCAGTGTGGACTCTTTTTGGATATTGTAATCTGAA 536381 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || | |||||| || ||||| || | |||||||||||||| || Sbjct 536380 AGAGTGCGACCATCTTCCAACTGTTTCCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 536321 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| ||| || || | || | | || || | || || Sbjct 536320 ATTCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCTATTGTGTCTGAGGCTTCTACC 536261 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 |||| ||||| |||| || || || ||||| || ||||| ||||| ||| Sbjct 536260 TCCAAGGTGATGGTTTTACCTGTGAGGGTTTTGACGAAGATCTGCATATTT 536210 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || |||||||| || || ||| ||||||||| ||||| ||||| | | Sbjct 536896 CCTCCTCGGAGTCGCAACACCAAGTGCAGTGTGGACTCTTTTTGGATATTGTAATCTGAA 536837 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || | |||||||| ||||| || | |||||||||||||| || Sbjct 536836 AGTGTGCGCCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 536777 Query 39178 ACGCTCTCTTTGTC 39191 | | |||||||| Sbjct 536776 ATTCCTTCTTTGTC 536763 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || |||||||| || || ||| ||| ||||| ||||| ||||| | | Sbjct 537124 CCTCCTCGGAGTCGCAACACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAATCTGAA 537065 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || || | |||||| || ||||| || | |||||||||||||| || Sbjct 537064 AGTGTGCGCCCATCTTCCAACTGTTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 537005 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||||| | ||| | | | | | || || | | || || | ||| || Sbjct 537004 ATTCCTTCTTTGT-CTTGAATCTTGGCCTTAACGTTCTCTATTGTGTCTGAAGCCTCAAC 536946 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || || ||||| || || ||||| ||||| Sbjct 536945 TTCGAGTGTGATGGTTTTCCCTGTGAGCGTCTTGACGAAGATCTGCAT 536898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429401289591758