Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_031280.1 Length=104906 Score E Sequences producing significant alignments: (Bits) Value seq6058 89.7 3e-13 >seq6058 Length=97819 Score = 89.7 bits (98), Expect = 3e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 53946 CATGGTCTTGAGTGGTGGGGTGAAGAGTTTGGTGTACCTAAACCGAAGATCGACAATTGG 54005 ||||||||||||| ||||||||| | ||||| || || ||||| ||||| | ||||| Sbjct 38366 CATGGTCTTGAGTCTTGGGGTGAATATTTTGGAGTTCCCAAACCAGAGATCAAGGATTGG 38307 Query 54006 GAAGACTTAACACAAGAAGAGTATGATCATCGTGTTATAGAGGACTGTAAGATT 54059 | | ||||| ||| ||| ||||||||||||||| | || || ||||||| Sbjct 38306 AAGAAGTTAACTCAAAGAGATTATGATCATCGTGTTGTTGAAGATGTTAAGATT 38253 Score = 82.4 bits (90), Expect = 5e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 50650 AATAATCTATCTGATAGATGGAAGGATTACTTTATTAAGGAGCTACATTTAATTGCATCA 50709 |||||| ||||||||||||||||||||||||| || || ||| ||| | | | Sbjct 41951 AATAATTTATCTGATAGATGGAAGGATTACTTCATAAAATCACTATTATTAGTGAAAGAA 41892 Query 50710 ATGTCAAGAGATGTGGATACAAAGGTTGGGGCGATTATTATTGATACAGAGAATAAAGT- 50768 | || | |||| || ||| | ||||| || |||||||||||| ||| || ||||| Sbjct 41891 TTATCTAAAGATAAAGAAACACAAGTTGGTGCTATTATTATTGATTTAGA-AACAAAGTC 41833 Query 50769 TGTCATAGCTAAAGGCTACAACGATTTACCAAGAGGTGT 50807 ||||| || || | ||| | |||||| |||||||| Sbjct 41832 AATCATATCTTCTGGTTTCAATGGTTTACCTAGAGGTGT 41794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335461660214842