Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halyomorpha_20halys_20[refseq_20GCF_5F000696795.1_202014-06-03] 12,168 sequences; 1,150,108,890 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2523 129 7e-25 seq53 122 1e-22 >seq2523 Length=169028 Score = 129 bits (142), Expect = 7e-25 Identities = 210/299 (70%), Gaps = 9/299 (3%) Strand=Plus/Minus Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCAC 62890 |||||||||||| || ||||| || ||||| ||||| | | |||| ||||| || Sbjct 121642 AGGATAATAATTTATGTCTATTATCTTATTTAGATTCCATGTAACAAC--CTTTGTT-AC 121586 Query 62891 ATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAATGCAAC 62947 | | |||| || ||||||| | | || || | | ||| | | ||||||| Sbjct 121585 AGCTTTCAACTTTTCAAAATCACAGGTTTTATCAGCTTTCATAAATTTACTTAATGCAAT 121526 Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||||| | |||||| || || | |||| | | | ||||| || || ||||| || Sbjct 121525 TGATGCTAAATTACAAACAGCAATTTCATCTGAAGAAGTATATTCAATAATTTCAGTACA 121466 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 ||||||||||||||| |||||||||| ||||| ||||| || | || || | ||| Sbjct 121465 AAGATTACTACACTTAATAGTTCCTAGATTTTTCTGATTTGATTTCCTATTGCAAGAATC 121406 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126 ||||| | ||| | || ||||||||||| |||||||| || || |||||||||| Sbjct 121405 TTTATACAACATGTAAGGTACACCAGTTTCAACTTGAGATTCAATGATAGCTTTCCAGA 121347 Score = 102 bits (112), Expect = 1e-16 Identities = 135/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| || ||||| ||||| | |||||| | || ||||||||| || || ||||| | Sbjct 123317 TACCTGAAATTCACCAGAAAGTACTCTTCTTGTATAAATATTAGATGTGTATGGTTCAAA 123258 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || |||||||| || |||||||||||||| || ||||| ||||| ||||| | | || Sbjct 123257 TGATTCATTATTGCCTAAAATTTGAGCAGTAGAAGCAGTTGGCATGGGTGCGATAAGCAA 123198 Query 62507 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATG-TTCCCAATTCCAAAG 62563 | ||| | | || ||||| || ||||| ||||| | ||| |||||| |||||| Sbjct 123197 AGAATTCCGTAATCC--ATGTTTTGAAATTTTTTCTTTCA-ATGCAGCCCAATCCCAAAG 123141 Query 62564 ATC 62566 ||| Sbjct 123140 ATC 123138 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||| | ||| | ||||| || || || || || ||||| || |||||| || | ||| Sbjct 113586 AGTTGCAGCACTGAATAATGTGGGTGAGGCATGTGTAAAATATCCTTCAGAGAGCAAATT 113527 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | |||| | | ||||||||| ||| ||||| || || || | ||| || Sbjct 113526 GTATGTTTTAATAACAGCATCTATATCCTCACCATGGATTCCAACAGCAACCCTCATCAA 113467 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTG 63809 |||||| |||||||||||||||| |||| Sbjct 113466 CATGTGTTGAGGTCTTTCAACAACTTTG 113439 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/223 (70%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 62609 ACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACT 62668 |||||| |||||| || || ||||||||||| | | ||||| | || |||||| Sbjct 123001 ACTGGCCGGCGATCCACTGTAAGTCTCATATGGTCCATATTCTTCAGCCAATTCACAACT 122942 Query 62669 CGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA--TCTTG-TGC 62725 ||||| | |||||| ||||| | |||||||| |||| || || ||| || | || Sbjct 122941 AGCCTCAAGTGCACCATAATACAAAGTTTCAAAAATCTGTTTGTTCAGAAGTCCAGCAGC 122882 Query 62726 TTCCGGGCTATCAAATGG----ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62781 ||| || |||||||| | |||| | ||||||| || || | ||||||| Sbjct 122881 TTC---ACTTTCAAATGGCAACCTCATTTGAATGAATAAA----TCAGCAAGCCCTTGAA 122829 Query 62782 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGC 62824 | ||||| || ||||| | ||||||| | ||||| ||| ||| Sbjct 122828 CTCCAATGCCAATAGGACGATGTCTCATGTTAGATCTTTGAGC 122786 >seq53 Length=1573976 Score = 122 bits (134), Expect = 1e-22 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 || || ||||| || ||||| ||||| || || | ||| ||||||||||| || | ||| Sbjct 796304 TCATTTGAAAAGGTAAGTCCTGGCATGAGACCTCTCTTCTTAAGCCAAAAAATAGCAGCA 796245 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743 || || || |||||||| |||||||| || |||||||| || | | |||||| ||| || Sbjct 796244 AAGGAGCCAGAAAAGAAAATTCCTTCAACAGCAGCAAACGCTACTATTCTCTCACCAAAA 796185 Query 33744 CCGGCGCTGTCA-TG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 ||| || | || ||||| | |||||||| |||||||| || ||||| | Sbjct 796184 GTGGCCGTGGGACTGGAGATCCAAGAAAGTGCCCAATCAGCCTTCTTCTTAACACACTCC 796125 Query 33801 ATCGTTTCTATGGCATTAAAGAGATA 33826 || ||||| |||||||| || | ||| Sbjct 796124 ATGGTTTCGATGGCATTGAATAAATA 796099 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 ||||| | ||| ||||| || | |||||||| ||||| || || ||||| ||||| ||| Sbjct 793942 TTAGAGAGATCAACTTCCTCAGCAGTCCAAAAGGATGCTTCAGCTTTTTTGTACATCTTC 793883 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATA 34187 || || |||||||||| ||||||||||||||||| || |||| || | ||||| Sbjct 793882 CATATATCATGATATTCAATTGGGAAAATAACAAACCTCCTTGGGTTATCTTTAAGGAGG 793823 Query 34188 GGTTCC 34193 |||||| Sbjct 793822 GGTTCC 793817 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 33397 CCAA-TTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 |||| |||| || ||||||||| || || ||||| || ||| |||||||| |||||| Sbjct 796813 CCAAGTTCACCAAGCAATCTATCAGCAACAAATTCGATGTATTGTTTCATCAGATCACAA 796754 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 |||||||| || | |||||| || || |||| |||||||| || || ||| ||| Sbjct 796753 TTCATTCCAATCATCGCAACTGGCAGCGCTTCAGTCAGAAATTCCTGCTCTATGACTACA 796694 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 ||||| | ||||| |||| | || || ||| || | | || || ||| Sbjct 796693 GCATTACTGATAATTTCGGTAACCCTCTCAACAGATGGTTTCTGAACAAGGTGCTTGAAC 796634 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 |||| ||| ||||| || || || ||||||| Sbjct 796633 ATCAGACAAGCGAAGTCACAATGAAGACCCT 796603 Score = 82.4 bits (90), Expect = 1e-10 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||| ||| ||||||||| || | || || ||||| || ||||| | |||||| || || Sbjct 794344 ATCTCTAATATAAGTATCAATGAGCAGGCTGTACATCTCAGAATGCACGTTTTCCATAGC 794285 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 || ||||| ||||||||||| ||||| || |||| || Sbjct 794284 AATTTGAAAACCGTAGAAACACCTAGCTTCAGTAACCT 794247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629721804743040