Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halyomorpha_20halys_20[refseq_20GCF_5F000696795.1_202014-06-03] 12,168 sequences; 1,150,108,890 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2523 132 6e-26 seq53 118 1e-21 >seq2523 Length=169028 Score = 132 bits (146), Expect = 6e-26 Identities = 211/299 (71%), Gaps = 9/299 (3%) Strand=Plus/Minus Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCAC 65683 |||||||||||| || ||||| || ||||| ||||| | | |||| ||||| || Sbjct 121642 AGGATAATAATTTATGTCTATTATCTTATTTAGATTCCATGTAACAAC--CTTTGTT-AC 121586 Query 65684 ATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACATGTTCAATGCAAC 65740 | | |||| || ||||||| | | ||| || | | ||| | | ||||||| Sbjct 121585 AGCTTTCAACTTTTCAAAATCACAGGTTTTATCAGCTTTCATAAATTTACTTAATGCAAT 121526 Query 65741 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 65800 ||||| | ||||||||| || | |||| | | | ||||| || || ||||| || Sbjct 121525 TGATGCTAAATTACAAACAGCAATTTCATCTGAAGAAGTATATTCAATAATTTCAGTACA 121466 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 ||||||||||||||| || ||||||| ||||| ||||| || | || || | ||| Sbjct 121465 AAGATTACTACACTTAATAGTTCCTAGATTTTTCTGATTTGATTTCCTATTGCAAGAATC 121406 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 65919 ||||| | ||| | || ||||||||||| |||||||| || || |||||||||| Sbjct 121405 TTTATACAACATGTAAGGTACACCAGTTTCAACTTGAGATTCAATGATAGCTTTCCAGA 121347 Score = 107 bits (118), Expect = 3e-18 Identities = 134/182 (74%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| |||||||| ||||| | |||||| | || ||||||||| || || ||||| | Sbjct 123317 TACCTGAAATTCACCAGAAAGTACTCTTCTTGTATAAATATTAGATGTGTATGGTTCAAA 123258 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || |||||||| || |||||||||||||| || ||||| ||||| ||||| | | || Sbjct 123257 TGATTCATTATTGCCTAAAATTTGAGCAGTAGAAGCAGTTGGCATGGGTGCGATAAGCAA 123198 Query 65300 ACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 65357 | ||| | | || ||||| || ||||| ||||| | | |||||| ||||||| Sbjct 123197 AGAATTCCGTAATCC--ATGTTTTGAAATTTTTTCTTTCAATGCAGCCCAATCCCAAAGA 123140 Query 65358 TC 65359 || Sbjct 123139 TC 123138 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||| | ||| | ||||| || || || || || ||||| || |||||| || | ||| Sbjct 113586 AGTTGCAGCACTGAATAATGTGGGTGAGGCATGTGTAAAATATCCTTCAGAGAGCAAATT 113527 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | |||| | | ||||||||| ||| ||||| || || || | ||| || Sbjct 113526 GTATGTTTTAATAACAGCATCTATATCCTCACCATGGATTCCAACAGCAACCCTCATCAA 113467 Query 66575 CATGTGCTGAGGTCTTTCAAC 66595 |||||| |||||||||||||| Sbjct 113466 CATGTGTTGAGGTCTTTCAAC 113446 >seq53 Length=1573976 Score = 118 bits (130), Expect = 1e-21 Identities = 151/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || || ||||| || ||||| ||||| || || | ||| ||||||||||| || | ||| Sbjct 796304 TCATTTGAAAAGGTAAGTCCTGGCATGAGACCTCTCTTCTTAAGCCAAAAAATAGCAGCA 796245 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319 || || |||||||||||||||||||| || || ||||| || | | |||||| ||| || Sbjct 796244 AAGGAGCCAGAAAAGAAAATTCCTTCAACAGCAGCAAACGCTACTATTCTCTCACCAAAA 796185 Query 36320 CCGGCACTGTCA-TG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 36376 ||| || | || ||||| | |||||||| |||||||| || ||||| | Sbjct 796184 GTGGCCGTGGGACTGGAGATCCAAGAAAGTGCCCAATCAGCCTTCTTCTTAACACACTCC 796125 Query 36377 ATTGTCTCTATAGCATTAAAGAGATA 36402 || || || || ||||| || | ||| Sbjct 796124 ATGGTTTCGATGGCATTGAATAAATA 796099 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 ||||| | ||| ||||| || | |||||||| ||||| || || ||||| ||||| ||| Sbjct 793942 TTAGAGAGATCAACTTCCTCAGCAGTCCAAAAGGATGCTTCAGCTTTTTTGTACATCTTC 793883 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTTTTGCAAGGATT 36763 || || |||||||||| |||||| ||||||||||| || || | || | | ||||| Sbjct 793882 CATATATCATGATATTCAATTGGGAAAATAACAAACCTCCTTGGGTTATCTTTAAGGAGG 793823 Query 36764 GGTTCC 36769 |||||| Sbjct 793822 GGTTCC 793817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||| ||| ||| |||||||| | || || ||||| || ||||| | |||||| || || Sbjct 794344 ATCTCTAATATAAGTATCAATGAGCAGGCTGTACATCTCAGAATGCACGTTTTCCATAGC 794285 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 36515 |||||||| ||||||||||| ||||| || |||| || Sbjct 794284 AATTTGAAAACCGTAGAAACACCTAGCTTCAGTAACCT 794247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 35973 CCAA-TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 |||| |||| || ||||||||| || |||||||| || ||| |||||||| |||||| Sbjct 796813 CCAAGTTCACCAAGCAATCTATCAGCAACAAATTCGATGTATTGTTTCATCAGATCACAA 796754 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT 36084 |||||||| || | |||||| || || |||| |||||||| || || || Sbjct 796753 TTCATTCCAATCATCGCAACTGGCAGCGCTTCAGTCAGAAATTCCTGCTCTAT 796701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658072691917120