Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halyomorpha_20halys_20[refseq_20GCF_5F000696795.1_202014-06-03] 12,168 sequences; 1,150,108,890 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1287 107 2e-18 seq1631 84.2 2e-11 >seq1287 Length=463317 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || || ||||| || || |||||||| | || ||| | | || || || ||| Sbjct 100066 TGCAGGGTTGATTCCTTCTGGATGTTGTAATCAGACAAGGTTCGGCCATCTTCAAGTTGT 100125 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||||||||||||||||||| || | || ||||| || |||||| Sbjct 100126 TTCCCAGCAAAAATAAGTCTCTGCTGATCCGGTGGAATTCCTTCTTTATCCTGAATTTTA 100185 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | ||| || ||| || ||| | || || ||||| || ||| Sbjct 100186 GCTTTAACATTTTCAATAGTGTCAGAAGGTTCTACTTCTAGTGTGATTGTTTTTCCGGTT 100245 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 |||||||| ||||||||||||||| Sbjct 100246 AAAGTTTTAACAAAAATTTGCATT 100269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCAG 18894 |||| || || || ||||||||||||||||| | | || |||||| |||| Sbjct 101662 TGCAGTGTGGATTCTTTTTGAATATTGTAATCAGAAAGGGT----GCGTCCATCTTCCAA 101717 Query 18895 CTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAAT 18954 |||||| || ||| | || || || |||||||| || | || ||||| || ||| Sbjct 101718 CTGTTTTCCTGCAAAGATCAGCCTTTGCTGATCTGGCGGAATTCCTTCTTTATCCTGAAT 101777 Query 18955 TTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACC 19014 ||| ||| || | | | ||| || ||| ||| ||| | ||||||||||| || Sbjct 101778 TTTAGCTTTAACATTTTCAATAGTGTCAGAAGGTTCCACTTCTAATGTAATGGTTTTTCC 101837 Query 19015 TGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| || |||||||||||||||||| Sbjct 101838 TGTTAGTGTCTTGACAAAAATTTGCATT 101865 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || || || |||||||||||||||||||| | | ||| | | || || ||||| Sbjct 100750 TGTAAGGTGGATTCCTTTTGAATATTGTAATCTGAAAGGGTTCGGCCATCTTCAAGCTGC 100809 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| | |||||| |||||| || | || ||||| || |||||| Sbjct 100810 TTTCCAGCAAAAATCAATCTCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGAATTTTG 100869 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | |||||| ||||| ||| | || || || || || || Sbjct 100870 GCTTTAACGTTCTCAATAGTATCAGATGGCTCAACTTCCAAAGTGATAGTCTTTCCAGTG 100929 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | |||||| |||||||||||||| Sbjct 100930 AGAGTTTTAACAAAAATTTGCAT 100952 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || ||||| || || ||||| |||||||| | | || | | || || ||||| Sbjct 102574 TGTAAAGTAGATTCTTTCTGAATGTTGTAATCTGAAAGAGTACGGCCATCTTCAAGCTGC 102633 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || | |||||| || || || | || |||||||| |||||| Sbjct 102634 TTTCCAGCAAATATTAATCTCTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGAATTTTA 102693 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | ||| || || |||||| ||| | ||||| |||||||| ||| Sbjct 102694 GCCTTGACATTTTCGATTGTGTCAGAAGGCTCAACTTCCAATGTAATTGTTTTACCAGTT 102753 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 |||||||| ||||||||||||||| Sbjct 102754 AAAGTTTTAACAAAAATTTGCATT 102777 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| || | | || | ||||| || || |||||||| ||||| ||||| | Sbjct 100268 TTCCTCCTCTCAGACGAAGTACAAGATGCAATGTTGATTCCTTTTGGATATTATAATCAG 100327 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || | || || | ||||| || ||| |||| | |||||||||||| | Sbjct 100328 AGAGGGTGCGCCCATCTTCTAATTGTTTGCCAGCAAAAATCAATCTCTGCTGATCTGGAG 100387 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || || || |||||| ||| || | | | |||||| || || Sbjct 100388 GAATTCCTTCCTTATCCTGAATTTTAGCTTTAACGTTTTCAATAGTATCTGATGGTTCAA 100447 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||||| ||||| || ||||||||||| ||||||||||||||| Sbjct 100448 CTTCCAATGTAATTGTTTTCCCAGTTAAAGTTTTAACAAAAATTTGCATT 100497 >seq1631 Length=286364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 18854 TTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATA 18913 ||||| ||||||||||| | | ||| | | || |||| |||||||| ||| ||||| Sbjct 119169 TTTTGTATATTGTAATCAGAGAGAGTTCTTCCATCTTCCAATTGTTTACCAGCAAAAATA 119110 Query 18914 AGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCG 18973 || ||||| ||||| || | || |||||||| |||||| ||| || | || Sbjct 119109 AGCCTCTGTTGATCTGGAGGTATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCG 119050 Query 18974 ACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAA 19033 | |||||| || || || | ||||||||||||||| || | || || || || Sbjct 119049 ATAGTATCAGAGGGTTCTACCTCTAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGAAG 118990 Query 19034 ATTTGCATT 19042 || |||||| Sbjct 118989 ATCTGCATT 118981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414511319890192