Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halyomorpha_20halys_20[refseq_20GCF_5F000696795.1_202014-06-03] 12,168 sequences; 1,150,108,890 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1287 120 2e-22 >seq1287 Length=463317 Score = 120 bits (132), Expect = 2e-22 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| || | ||| | || ||||||||||| ||||| ||||| || Sbjct 102093 ACCACCTCGCAGCCGCAGTACAAGATGAAGAGTGGACTCTTTTTGAATATTATAATCTGA 102152 Query 33202 CAAATTGAGTTGGTC-ATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 | | ||| | | ||| ||| ||| |||||| ||| |||||||| |||||||| | Sbjct 102153 AA----GGGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAAATTAAACGCTGCTGGTCAG 102208 Query 33258 TGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 |||||| |||||||| || ||| | ||| || ||| ||| ||||| |||| Sbjct 102209 GGGGTATTCCTTCTTTATCTTGAATTTTCGCTTTGACATTTTCAATAGTGTCAGATGGTT 102268 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||||| || || || || || ||||||||||| || || |||||||| Sbjct 102269 CAACTTCCAGCGTGATTGTCTTGCCGGTAAGAGTTTTAACAAATATTTGCAT 102320 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || |||| |||||||| | || || || || || || ||||||||||| Sbjct 100498 CCACCTCTCAAACGCAGGACCAAATGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGAA 100557 Query 33203 AAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | | ||| | || || | ||| |||||| ||| || |||||||| || || | Sbjct 100558 A----GGGTTCGGCCATCTTCGAGTTGTTTTCCAGCAAAAATCAAACGTTGTTGATCTGG 100613 Query 33259 GGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || |||||||| || ||| |||| | || ||| ||| || || || Sbjct 100614 TGGAATTCCTTCTTTATCCTGAATTTTAGCCT---TCACATTTTCAATGGTATCTGAAGG 100670 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||| ||||| || || || || || ||||||||||| || ||||||||||| Sbjct 100671 TTCAACTTCCAGCGTGATTGTCTTGCCGGTAAGAGTTTTAACAAAAATTTGCAT 100724 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| || | || ||||| || || || ||||| || ||||| ||||| || Sbjct 103006 CCTCCTCTTAAACGAAGTACTAAATGTAAGGTTGATTCTTTCTGAATATTATAATCTGAA 103065 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || || | ||||||||| ||| ||||| | || ||||| | ||| Sbjct 103066 AGGGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGGGGA 103125 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || |||||||| || | | | |||| | || ||| || ||||| |||| | Sbjct 103126 ATTCCTTCTTTGTCTTGGATTTTAGCCT---TGACATTTTCGATTGTGTCAGAAGGTTCA 103182 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || | ||| || ||||| || ||||||||||| || || || |||||| Sbjct 103183 ACTTCTAAAGTGATTGTTTTGCCAGTAAGAGTTTTAACAAAGATCTGCATG 103233 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 ||||| || | ||||| || ||||||| || || || || || || |||||||||||| Sbjct 100042 CCGCCCCTAAGACGCAAAACTAAATGCAGGGTTGATTCCTTCTGGATGTTGTAATCAGAC 100101 Query 33203 AAATTGAGTTGGTCATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTG 33259 || | | || |||| ||| ||| || ||| ||| || | | ||||| |||| Sbjct 100102 AA---GGTTCGGCCATCTTCAAGTTGTTTCCCAGCAAAAATAAGTCTCTGCTGATCCGGT 100158 Query 33260 GGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || || |||||||| || ||| ||| || ||| ||| ||||| |||| Sbjct 100159 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGAAGGTTCT 100218 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || |||||||| || | |||||| || ||||||||||| Sbjct 100219 ACTTCTAGTGTGATTGTTTTTCCGGTTAAAGTTTTAACAAAAATTTGCAT 100268 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| ||| || |||||||| |||||||||||||| | || || || ||||| || Sbjct 101661 ATGCAGTGTGGATTCTTTTTGAATATTGTAATCAGAAAGGGTGCGTCCATCTTCCAACTG 101720 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 ||||| ||| || | | |||||| || | || || |||||||| || ||| Sbjct 101721 TTTTCCTGCAAAGATCAGCCTTTGCTGATCTGGCGGAATTCCTTCTTTATCCTGAATTTT 101780 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 ||| || ||| ||| ||||| |||| || || | || || |||||||| || Sbjct 101781 AGCTTTAACATTTTCAATAGTGTCAGAAGGTTCCACTTCTAATGTAATGGTTTTTCCTGT 101840 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||||||||| Sbjct 101841 TAGTGTCTTGACAAAAATTTGCAT 101864 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | ||||| || | ||| | || ||||||||||||||||| ||||| || Sbjct 101181 ACCACCTCGCAGCCGCAGTACAAGATGAAGAGTGGACTCTTTTTGTATATTATAATCTGA 101240 Query 33202 CAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCG 33257 || | ||| | || || | ||| |||||| || || ||||| |||||||| | Sbjct 101241 CA----GGGTTCGGCCATCTTCGAGTTGTTTTCCAGCGAAGATCAAACGCTGCTGGTCAG 101296 Query 33258 TGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGG 33314 || || |||||||| || || | ||| || || ||| || ||||| | Sbjct 101297 GAGGAATTCCTTCTTTATCTTGAATTTTAGCC---TTAACATTTTCGATGGTGTCTGAAG 101353 Query 33315 GTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | ||| || | || |||||||| || || ||||| || ||||| || ||||| Sbjct 101354 GCTCAACTTCTAATGTAATCGTTTTACCAGTTAGAGTCTTGACGAAGATCTGCAT 101408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318730326078864