Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halyomorpha_20halys_20[refseq_20GCF_5F000696795.1_202014-06-03] 12,168 sequences; 1,150,108,890 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2523 127 3e-24 seq53 127 3e-24 >seq2523 Length=169028 Score = 127 bits (140), Expect = 3e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| ||||| | ||||| | || ||||||||| || |||||||| | ||| Sbjct 123313 TGAAATTCACCAGAAAGTACTCTTCTTGTATAAATATTAGATGTGTATGGTTCAAATGAT 123254 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| || | |||||||||||| || ||||||||||| ||||| | | ||| | Sbjct 123253 TCATTATTGCCTAAAATTTGAGCAGTAGAAGCAGTTGGCATGGGTGCGATAAGCAAAGAA 123194 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCC-AATCCCAAAGATCAGA 68897 || | | |||||| || ||||| ||||| | ||| || ||||||||||||||| Sbjct 123193 TTCCGTAATCCATGTTTTGAAATTTTTTCTTTCA-ATGCAGCCCAATCCCAAAGATCAGT 123135 Query 68898 TGGTACAACATTCCAAAGATCGTATTG 68924 ||| || |||||| | ||| || || Sbjct 123134 TGGAGTAATATTCCACATATCATACTG 123108 Score = 100 bits (110), Expect = 4e-16 Identities = 199/294 (68%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 69162 AGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTC 69221 |||||||||||| || ||||| || ||||| ||||| | || || || || | Sbjct 121642 AGGATAATAATTTATGTCTATTATCTTATTTAGATTCCATGTAACAACCTTTGTTACAGC 121583 Query 69222 CTTTAGTTTGAGAAAATCAAATCGTCCATC---TATAACAAACATATTCAGTGCTACAGA 69278 || | || ||||||| | | ||| | | | ||| || | | ||| | || Sbjct 121582 TTTCAACTTTTCAAAATCACAGGTTTTATCAGCTTTCATAAATTTACTTAATGCAATTGA 121523 Query 69279 TGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAG 69338 ||||| ||||||||| || | |||| ||| | ||||| || || || ||||| || Sbjct 121522 TGCTAAATTACAAACAGCAATTTCATCTGAAGAAGTATATTCAATAATTTCAGTACAAAG 121463 Query 69339 ATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTT 69398 ||||||||| || ||||| || ||||||| |||||| || | || || | || || Sbjct 121462 ATTACTACACTTAATAGTTCCTAGATTTTTCTGATTTGATTTCCTATTGCAAGAATCTTT 121403 Query 69399 GTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 || | || | || ||||||||||| |||||||| || |||| |||||| Sbjct 121402 ATACAACATGTAAGGTACACCAGTTTCAACTTGAGATTCAATGATAGCTTTCCA 121349 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||| | ||| | |||||||| || || || || || || || |||||| |||| ||| Sbjct 113586 AGTTGCAGCACTGAATAATGTGGGTGAGGCATGTGTAAAATATCCTTCAGAGAGCAAATT 113527 Query 70050 GTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCA 70108 |||||||| |||| | | ||||||||| ||| ||| ||||| | || || | ||||| Sbjct 113526 GTATGTTTTAATAACAGCATCTATATCCTCAC-CATGGATTCCAACAGCAACCCTCATCA 113468 Query 70109 ACATATGCTGAGGTCGTTCTAC 70130 |||| || ||||||| ||| || Sbjct 113467 ACATGTGTTGAGGTCTTTCAAC 113446 >seq53 Length=1573976 Score = 127 bits (140), Expect = 3e-24 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||| | || | || || ||||| || ||||| ||||| ||||| | ||| | Sbjct 796324 CCTCATCTCGAGATATGAGCTCATTTGAAAAGGTAAGTCCTGGCATGAGACCTCTCTTCT 796265 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || |||||||| || ||||||||||| || ||||| || || ||||| | Sbjct 796264 TAAGCCAAAAAATAGCAGCAAAGGAGCCAGAAAAGAAAATTCCTTCAACAGCAGCAAACG 796205 Query 39759 CAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | |||||| || || | || | | ||||| |||||||||||| Sbjct 796204 CTACTATTCTCTCACCAAAAGTGGCCGTGGGACTGGAGATCCAAGAAAGTGCCCAATCAG 796145 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||||| ||||| ||| ||||| || ||||| || | ||| Sbjct 796144 CCTTCTTCTTAACACACTCCATGGTTTCGATGGCATTGAATAAATA 796099 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || || | ||| ||||| ||||| |||||||| || || || || ||||||||||| ||| Sbjct 793942 TTAGAGAGATCAACTTCCTCAGCAGTCCAAAAGGATGCTTCAGCTTTTTTGTACATCTTC 793883 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATG 40222 ||||||||| |||||| ||||| ||||||||||| || |||| || | | ||||| | Sbjct 793882 CATATATCATGATATTCAATTGGGAAAATAACAAACCTCCTTGGGTTATCTTTAAGGAGG 793823 Query 40223 GGTTCC 40228 |||||| Sbjct 793822 GGTTCC 793817 Score = 102 bits (112), Expect = 1e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 39442 AATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT 39501 || ||||||||| ||||||||||| |||||| |||||||| |||||||||||||| || Sbjct 796802 AAGCAATCTATCAGCAACAAATTCGATGTATTGTTTCATCAGATCACAATTCATTCCAAT 796743 Query 39502 GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCT--CTGTT 39559 | |||||| || || || || ||||| || | || ||| |||| || | ||| | Sbjct 796742 CATCGCAACTGGCAGCGCTTCAGTCAGAAATTCCTGCTCTATGACTACAGCATTACTGAT 796683 Query 39560 ATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAG 39619 | | ||| || || |||| || ||| || | | || || ||||| | || Sbjct 796682 AATTTCG--GTAACCCTCTCAACAGATGGTTTCTGAACAAGGTGCTTGAACATCAGACAA 796625 Query 39620 GCGAAGTCACAATGTAGGCCCT 39641 |||||||||||||| || |||| Sbjct 796624 GCGAAGTCACAATGAAGACCCT 796603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686804321171520