Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Halyomorpha_20halys_20[refseq_20GCF_5F000696795.1_202014-06-03] 12,168 sequences; 1,150,108,890 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq91 143 2e-29 seq276 111 1e-19 seq53 111 1e-19 >seq91 Length=3084333 Score = 143 bits (158), Expect = 2e-29 Identities = 243/350 (69%), Gaps = 4/350 (1%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 |||||| || || || ||||||| ||||| | | |||||||||| || | |||||||| Sbjct 98048 AGGTGACCTGGGCCCAATTTATGGCTTTCAATGGAGACATTTTGGTGCCAGATATGACAA 97989 Query 40925 TATGTACTCTGATTATACCAATA--AAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 ||| | |||||||| |||| | || | || || |||| | | || | | | Sbjct 97988 CATGCATTCTGATTA--CCAAGGCCAGGGTGTTGACCAGCTACAAAGTATCATTAAGATG 97931 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 || ||| |||| ||| | | || ||||| | || |||||||| || | Sbjct 97930 ATAAAAGAGAATCCAGATGATAGGAGGATGATATTATCTGCATGGAACCCTGTTGATATT 97871 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102 | | ||||| ||||| || || |||| || |||||||| ||| |||||| ||| Sbjct 97870 CCTCAAATGGCTTTGCCTCCATGCCATTGCTTGGCACAGTTTTATGTTGCCAATGGAGAA 97811 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 |||| || ||| |||| |||||||||| ||| |||||| |||| || || ||||| || Sbjct 97810 TTGTCCTGCCAACTGTACCAAAGATCAGCTGATATGGGATTAGGTGTTCCCTTTAATATT 97751 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 || |||||||| | | || | |||||||||||| || |||||||| Sbjct 97750 GCTAGTTATGCATTTTTAACTCACATGATTGCACACATTGTTAATTTAAA 97701 >seq276 Length=734573 Score = 111 bits (122), Expect = 1e-19 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 |||||||| ||||| || ||||||| | ||| || ||||| ||||||||| || Sbjct 584836 GGATGTAATCATGTGAAGGGCATTTTGCTGTTTGGACCTCCGGGAACTGGAAAAACTCTA 584777 Query 19390 ATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGT 19446 || ||| || || | ||||| | |||| | | |||| |||||||| |||||| Sbjct 584776 ATGGCGCGACAAATAGGTAAAATGCTTAATGCTAGGGAACCA---AAAATTGTTAATGGT 584720 Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506 ||| |||| | |||| |||||||| |||| || | ||| || | | |||||||| Sbjct 584719 CCTCAAATTCTGGATAAGTATGTAGGAGAATCAGAGGCAAACATAAGGAGACTGTTTGCT 584660 Query 19507 GACGCTGAAGAAGAACAAAAA 19527 || |||||||||||||||||| Sbjct 584659 GATGCTGAAGAAGAACAAAAA 584639 Score = 104 bits (114), Expect = 2e-17 Identities = 119/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA--- 19608 || ||||| || || |||||| |||| || ||||| || ||||| || | || | Sbjct 582334 CATATTATTATCCTCGATGAAATGGATGCCATCTGCAAAGCTAGAGGATCAGTTGGAGGT 582275 Query 19609 AAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAAC 19665 ||| ||||| ||||| ||||| |||||||| || ||||| ||| |||| |||||| | Sbjct 582274 AATACAGGAGTGCATGATACTGTAGTCAATCAGCTTCTGTCTAAAATAGATGGTGTTGAT 582215 Query 19666 CAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 || | ||||||||||| ||||||| ||||| || ||| Sbjct 582214 CAGTTAAATAATATTTTGATTATTGGAATGACAAACAGA 582176 >seq53 Length=1573976 Score = 111 bits (122), Expect = 1e-19 Identities = 123/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 ||||||| || || | || |||||||| | ||| ||||| ||||||||||| || || | Sbjct 796184 CTTTTGGTGAGAGAATAGTAGCGTTTGCTGCTGTTGAAGGAATTTTCTTTTCTGGCTCCT 796243 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| || || |||||| | ||||| ||||| | ||||| || | || |||||||||| Sbjct 796244 TTGCTGCTATTTTTTGGCTTAAGAAGAGAGGTCTCATGCCAGGACTTACCTTTTCAAATG 796303 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || | ||| ||| ||||| | |||| ||| || || |||| Sbjct 796304 AGCTCATATCTCGAGATGAGGTATTAC-TTGTTATATTACTTG 796345 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 |||| ||| || || |||||||| | || |||||| |||||||||| |||||| | Sbjct 793827 CTTAAAGATAACCCAAGGAGGTTTGTTATTTTCCCAATTGAATATCATGATATATGGAAG 793886 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 |||||||||||||| | || || |||||||| || || ||||||||| | |||| Sbjct 793887 ATGTACAAAAAAGCTGAAGCATCCTTTTGGACTGCTGAGGAAGTTGATCTCTCTAA 793942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397397058268840