Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8630 113 5e-20 seq6989 105 8e-18 >seq8630 Length=35068 Score = 113 bits (124), Expect = 5e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||||||||| ||||||||||| || || || ||||| || || |||||||| | ||||| Sbjct 13722 ATACATTTCGGAATGAATGTTCTCTATTGCAATTTGGAAGCCATAGAAACAACGCGCCTC 13663 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 | ||||| |||||| || |||| ||| | ||||||||| || || |||||| Sbjct 13662 TGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGATTTTCATTGACGATACCGTCAGA 13603 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 24589 || ||||| |||||||| || || ||| |||||| |||| || Sbjct 13602 AGCGGCAAAGAACGCCAACACGTGGGATATGAAATATCTTTCATC 13558 >seq6989 Length=241196 Score = 105 bits (116), Expect = 8e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGA 54481 |||| | || || ||||| || || || ||||||||||| || |||||| ||||| | Sbjct 4520 TAGTACAGGCGTTGAATAACGTTGGCGACGCGTGCGTAAAATATCGTTCAGACAAGTA-A 4462 Query 54482 TTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 54541 | ||||| || ||| | || ||||| | ||||| || || || || | ||| Sbjct 4461 TCATACGTTTCTATAACCTTGTTAATATCATCCTCGTGAATGCCAACAGCCACTCTCATC 4402 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 | ||||||||| ||||| || || |||||| ||| ||||| ||||| ||| | | ||| Sbjct 4401 AGCATGTGCTGCGGTCTCTCTACTATCTTGCCGTTGATTTTGAGCAAATAGCTTCTCTCC 4342 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 54652 | ||||| ||||| | ||| ||||| ||||| |||| || || || ||| Sbjct 4341 AGTGTTTTGAAACCCATATAATTGTAATTGAAA--TCTCTGTCATATATTATA 4291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593655600422640