Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3349 113 4e-20 seq8311 84.2 2e-11 seq4549 84.2 2e-11 >seq3349 Length=644485 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| |||| || ||||| |||||| ||| |||| | || Sbjct 96841 ATGCAGATTTTCGTCAAAACCCTGACTGGAAAAACGATTACCTTGGAAGTGGAAGCATCA 96782 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || |||||||| | || ||||| Sbjct 96781 GACACCATTGAGAATGTGAAGGCGAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 96722 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| ||||||||||| ||||| || || || |||| || | || |||||| Sbjct 96721 CAGAGACTGATCTTTGCGGGTAAACAGCTCGAGGACGGACGAACTTTGTCAGACTACAAT 96662 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||||||||| || |||| | ||| | || || || Sbjct 96661 ATTCAGAAGGAATCTACTCTGCATTTGGTACTCCGACTTCGTGGCGG 96615 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || ||||| ||||| |||||||| ||| |||| || || | Sbjct 97297 ATGCAGATTTTCGTGAAGACATTAACGGGAAAAACCATCACCCTCGAAGTCGAGGCCTCC 97238 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||| ||| ||| ||||| ||||| | || ||||| Sbjct 97237 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCCGATCAG 97178 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || || || ||||| || || ||| || |||||||||| Sbjct 97177 CAGCGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACTTTGTCCGATTACAAC 97118 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||||||||| |||||| ||||| | ||| | ||||| || Sbjct 97117 ATTCAGAAGGAATCTACCCTTCACTTGGTGCTTCGACTTCGAGGTGG 97071 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||||||| |||||||| || ||| || | | Sbjct 96613 ATGCAAATCTTCGTGAAGACTTTGACGGGGAAAACCATCACTTTGGAAGTTGAGGCTTCC 96554 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||| ||| ||| ||||| ||||| | || ||||| Sbjct 96553 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCCGATCAG 96494 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || |||||||| || || ||||| ||||| ||| || | ||||||||| Sbjct 96493 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACTTTGTCTGATTACAAT 96434 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| |||||||| |||||| |||| | || | ||||| || Sbjct 96433 ATACAGAAAGAATCTACCCTTCACTTGGTACTTCGGCTTCGAGGTGG 96387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || ||||| |||||| | ||||||||||| |||||||| ||| Sbjct 95152 GACAAAGAGGGTATCCCTCCCGATCAGCAAAGATTAATCTTTGCGGGTAAACAACTAGAA 95093 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || || | |||||||| || ||||| ||||| || |||||| ||||| | Sbjct 95092 GACGGACGCACCCTGTCTGATTACAACATCCAGAAAGAATCCACCCTTCACCTGGTGCTT 95033 Query 29175 CGATTACGAGGAGG 29188 ||| | ||||| || Sbjct 95032 CGACTTCGAGGTGG 95019 >seq8311 Length=725843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||| || | || |||||| ||| | || |||||||| ||||| ||||||||| Sbjct 132884 GATAAAGAGGGAATTCCTCCAGATCAGCAACGTCTGATCTTTGCCGGCAAGCAACTGGAA 132943 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || |||| | | || || ||||| |||||||| || || ||||| |||| | Sbjct 132944 GACGGCAGAACTCTTTCTGACTATAATATCCAGAAGGAGTCCACACTTCATCTGGTTCTG 133003 Query 29175 CGATTACGAGGAGG 29188 || | |||||||| Sbjct 133004 CGTCTTCGAGGAGG 133017 >seq4549 Length=1308415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||||||||||||| ||||| || || ||||||||||||||| | |||| | | || Sbjct 663388 AGATCAACAAAGACTGATCTTCGCTGGAAAACAACTGGAAGATGGGAGAACTTTATCTGA 663329 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||| || || |||||| | || | ||||| || || ||||| || Sbjct 663328 CTATAACATTCAAAAAGAGTCTACTTTACATTTAGTGTTGCGCTTGCGAGGTGG 663275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428289575471915