Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3349 96.9 2e-15 seq8311 87.8 1e-12 >seq3349 Length=644485 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||||||| || |||| || | ||| || || || || Sbjct 96194 TTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCGAGCTGTTTACCCGCAAA 96253 Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGA 34315 ||||||| |||||| || | |||| | | || ||||| ||| || ||||| | | Sbjct 96254 TATGAGCCTCTGCTGATCAGGCGGG-ATTCCTTCTTTGTCTTGAATC-TTAGCTTTCACA 96311 Query 34316 TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 | | || | ||||| | ||||| |||| ||||||||| || || || | ||||||| Sbjct 96312 TTCTCGATGGTATCGGAGGCCTCGACCTCCAACGTGATGGTCTTCCCCGTCAAAGTTTTC 96371 Query 34376 ACAAAGATCTGCAT 34389 || || |||||||| Sbjct 96372 ACGAAAATCTGCAT 96385 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||| || |||| ||| | ||| |||||||||||| ||||| || ||| Sbjct 96387 CCACCTCGAAGCCGAAGTACCAAGTGAAGGGTAGATTCTTTCTGTATATTGTAATCAGAC 96446 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| || | ||||| || || || ||||| |||||||| ||| || Sbjct 96447 AAAGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGGG 96506 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || |||||| ||| | | | |||| |||| | || || Sbjct 96507 ATCCCTTCCTTATCTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAAGCCTCAACT 96566 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| || || | ||| ||||| ||||| ||||| Sbjct 96567 TCCAAAGTGATGGTTTTCCCCGTCAAAGTCTTCACGAAGATTTGCAT 96613 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| ||| ||||| |||||||| ||||||| ||| |||| Sbjct 97086 AGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGACAAAGTACGTCCGTCC 97145 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||| ||||| |||||||| ||| || | | ||||| || Sbjct 97146 TCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCGGGTGGGATCCCTTCCTTATCT 97205 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | | | |||| |||| | ||||| || | ||||||||| Sbjct 97206 TGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAGGCCTCGACTTCGAGGGTGATGGTT 97265 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| || |||||||| Sbjct 97266 TTTCCCGTTAATGTCTTCACGAAAATCTGCAT 97297 >seq8311 Length=725843 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| ||||| || | || || ||||| || || ||||| || Sbjct 133018 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCCTTCTGGATATTATAGTCAGA 132959 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | |||| |||| |||||||| || || || || || ||||| || || Sbjct 132958 AAGAGTTCTGCCGTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGTTGCTGATCTGGAGG 132899 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || ||||| ||||| || |||| | || | | |||||| Sbjct 132898 AATTCCCTCTTTATCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCAGAAGCTTCGAC 132839 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 132838 CTCAAGAGTGATGGTCTTGCCTGTGAGAGTCTTCACAAAGATTTGCAT 132791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323036984346080