Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3349 96.9 3e-15 seq8311 89.7 4e-13 seq7689 87.8 1e-12 >seq3349 Length=644485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||| | | | ||| | ||| ||||| || || ||||||||||| ||| Sbjct 94790 GCCACCTCTGAGACGAAGTACAAGGTGAAGCGTAGATTCTTTTTGAATGTTGTAATCGGA 94849 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| || |||||||| || || || || || | || || |||||||| Sbjct 94850 CAAGGTGCGTCCGTCTTCTAGTTGTTTACCCGCAAAGATTAATCTTTGCTGATCGGGAGG 94909 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||| ||||| ||||| |||||| | | | | |||| | || || Sbjct 94910 GATACCCTCTTTGTCTTGGATTTTCGCCTTAACATTCTCGATGGTGTCGGATGCTTCAAC 94969 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||| || || | ||||||||| ||||| ||||| Sbjct 94970 CTCCAACGTGATGGTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCAT 95017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || || || || ||||| |||||| | |||| | || || Sbjct 96861 ACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCGGATAACGTGCGACCATCTTCA 96920 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||| || || ||||| | |||||| || || || | || ||||| ||| | Sbjct 96921 AGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCCGGGGGGATTCCTTCCTTATCCTGA 96980 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | |||| ||||||| || || ||||| Sbjct 96981 ATCTTCGCCTTGACATTTTCAATAGTGTCGGAAGCCTCAACCTCCAACGTGATGGTCTTC 97040 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| | ||||||||| ||||| ||||| Sbjct 97041 CCCGTTAAAGTCTTCACGAAGATCTGCAT 97069 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| | || | |||||||| || || ||||||||||||||||| ||| | Sbjct 97071 CCACCTCGAAGTCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGAC 97130 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || |||| || ||||| ||||||||||| || | ||||| || ||||| || Sbjct 97131 AAAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCGGGTGGG 97190 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || ||| ||| ||| || | | | |||| |||| || Sbjct 97191 ATCCCTTCCTTATCTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAGGCCTCGACT 97250 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || | ||| || || || ||||| | |||||||| || || |||||| ||| Sbjct 97251 TCGAGGGTGATGGTTTTTCCCGTTAATGTCTTCACGAAAATCTGCATGGTGC 97302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| | | | ||||||||| || || || ||||| || ||||| || Sbjct 96386 GCCACCTCGAAGCCGAAGTACCAAGTGAAGGGTAGATTCTTTCTGTATATTGTAATCAGA 96445 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || |||| || ||||| ||||| || || || | ||||| || ||||| || Sbjct 96446 CAAAGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGG 96505 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| || ||| ||| ||| || | | | |||| | |||| || Sbjct 96506 GATCCCTTCCTTATCTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAAGCCTCAAC 96565 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || ||||||| ||||||||| ||||||||||| Sbjct 96566 TTCCAAAGTGATGGTTTTCCCCGTCAAAGTCTTCACGAAGATTTGCAT 96613 >seq8311 Length=725843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| || || ||||| || | |||| ||| Sbjct 132999 ACCAGATGAAGTGTGGACTCCTTCTGGATATTATAGTCAGAAAGAGTTCTGCCGTCTTCC 132940 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || ||||| || |||| || || || || ||||| | ||||| || ||| | Sbjct 132939 AGTTGCTTGCCGGCAAAGATCAGACGTTGCTGATCTGGAGGAATTCCCTCTTTATCCTGA 132880 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | | || ||||| | || || |||||| Sbjct 132879 ATCTTAGCCTTTACATTTTCTATTGTGTCAGAAGCTTCGACCTCAAGAGTGATGGTCTTG 132820 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || |||||||||||||||||||||||||| Sbjct 132819 CCTGTGAGAGTCTTCACAAAGATTTGCATGTT 132788 >seq7689 Length=276120 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 13259 TGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGG 13318 ||| ||||| | ||||| || | ||||| | || ||||| |||||||| || || Sbjct 257016 TGCTGGTTTTTATTACACAGGAAATGGTGATCAAACGTTGTGCTACTATTGTGGAGGAGG 257075 Query 13319 ATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATG-TAAGATGGTT 13372 ||| |||||||||||||| ||||||| ||||||||||| |||| |||| ||||| Sbjct 257076 ATTAAAAGATTGGGAGCCAGAAGATGATCCTTGGGAACAACATGCTAAG-TGGTT 257129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395032380391753