Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3349 104 2e-17 seq8719 84.2 2e-11 >seq3349 Length=644485 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| |||| || || || ||||||||||| ||||| ||||||| Sbjct 96843 CCACCGCGTAGACGAAGAACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCGGAT 96902 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | |||||| || ||| |||| | ||| ||||||||| ||| Sbjct 96903 AACGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCCGGGGGG 96962 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | |||||| | | ||| |||||| | ||| Sbjct 96963 ATTCCTTCCTTATCCTGAATCTTCGCCTTGACATTTTCAATAGTGTCGGAAGCCTCAACC 97022 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || || || || || || || || || ||||| Sbjct 97023 TCCAACGTGATGGTCTTCCCCGTTAAAGTCTTCACGAAGATCTGCAT 97069 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| |||||| || ||||| || ||||||||||| |||| | Sbjct 97071 CCACCTCGAAGTCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGAC 97130 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | || || | ||| || || || |||| || | || ||||| || Sbjct 97131 AAAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCGGGTGGG 97190 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||| | | ||| || | | | ||||| || |||| | Sbjct 97191 ATCCCTTCCTTATCTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAGGCCTCGACT 97250 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| |||| || || ||||| || || ||||| ||||| Sbjct 97251 TCGAGGGTGATGGTTTTTCCCGTTAATGTCTTCACGAAAATCTGCAT 97297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | |||||| || |||||||||||||||||||| |||| || || | || Sbjct 94805 AAGTACAAGGTGAAGCGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTGCGTCCGTC 94864 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 ||| | |||||| |||||| |||| | |||||| ||||| Sbjct 94865 TTCTAGTTGTTTACCCGCAAAGATTAATCTTTGCTGATC 94903 >seq8719 Length=610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | |||||| || |||||||||||||||||||| |||| || || | || Sbjct 188 AAGTACAAGGTGAAGCGTAGATTCTTTTTGAATGTTGTAATCGGACAAGGTGCGTCCGTC 129 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 ||| | |||||| |||||| |||| | |||||| ||||| Sbjct 128 TTCTAGTTGTTTACCCGCAAAGATTAATCTTTGCTGATC 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379302885393285