Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7280 100 6e-16 seq8630 86.0 1e-11 >seq7280 Length=1514598 Score = 100 bits (110), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 ||||| | | || ||||||| | | || |||| || ||| || ||||| | | |||| Sbjct 1012158 TTCCATTATTGACAACCAAGAGAGTATTTTGGAAAGCAGTGGTTGAAGAGTTGTTATGGT 1012217 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAG--ATACACATCTGGAA 35340 |||||| || ||| | | |||||||| || ||| ||| |||||||||||| | Sbjct 1012218 TCATCAAAGGATCAACAAATTCTAAAGAATTAGC--AGATAAAGGTATACACATCTGGGA 1012275 Query 35341 CGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGA 35400 ||||| ||||| | |||||||| | || || ||| |||| || || || Sbjct 1012276 TAAAAATGGTTCGCGTGCTTTTTTGGATTCCTGTGGCTTTAGCGACAGAGAGGAAGGTGA 1012335 Query 35401 TTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA 35448 ||| ||||| || || |||||||||||| | |||| ||||| ||||| Sbjct 1012336 TTTAGGACCTGTCTATGGATTCCAATGGAGACATTACGGTGCAGAATA 1012383 >seq8630 Length=35068 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 101907 CGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCAT 101966 |||||| || || || ||||| ||||||||||| |||||||| |||||| |||||| Sbjct 14888 CGGAACGTATAGTCGCGTTTGCCGCAGTTGAAGGTATCTTCTTCAGTGGTAGTTTCGCAG 14947 Query 101967 CCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCA 102026 | || |||||| | ||||| | || | |||| |||||||| | ||| ||| ||| Sbjct 14948 CAATCTTCTGGCTAAAGAAGCGAGGAGTGATGCCGGGTCTCACATTTAGCAACGAGCTCA 15007 Query 102027 TTTCTAGGGACGAAG 102041 |||| | || |||| Sbjct 15008 TTTCACGAGATGAAG 15022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989471245252815