Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8630 104 3e-17 seq6989 100 4e-16 >seq8630 Length=35068 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||| ||||||||||| || || || || || || || |||||||| | ||||| Sbjct 13722 ATACATTTCGGAATGAATGTTCTCTATTGCAATTTGGAAGCCATAGAAACAACGCGCCTC 13663 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | ||||| |||||| || |||| ||| | ||||||||| || || || ||| Sbjct 13662 TGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGATTTTCATTGACGATACCGTCAGA 13603 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 34036 || ||||| |||||||| || || ||| |||||| |||| || Sbjct 13602 AGCGGCAAAGAACGCCAACACGTGGGATATGAAATATCTTTCATC 13558 >seq6989 Length=241196 Score = 100 bits (110), Expect = 4e-16 Identities = 169/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGA 63719 |||| | || || ||||| || || || ||||||||||| || |||||| ||||| | Sbjct 4520 TAGTACAGGCGTTGAATAACGTTGGCGACGCGTGCGTAAAATATCGTTCAGACAAGTA-A 4462 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 | ||||| || ||| | || ||||| | ||||| || || || || | ||| Sbjct 4461 TCATACGTTTCTATAACCTTGTTAATATCATCCTCGTGAATGCCAACAGCCACTCTCATC 4402 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||||||||| ||||| || || || ||| ||| ||||| | ||| ||| | | ||| Sbjct 4401 AGCATGTGCTGCGGTCTCTCTACTATCTTGCCGTTGATTTTGAGCAAATAGCTTCTCTCC 4342 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897 | ||||| ||||| | ||| ||||| ||||| |||| || || || ||| | |||| Sbjct 4341 AGTGTTTTGAAACCCATATAATTGTAATTGAAA--TCTCTGTCATATATTATAGCAGAAT 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629747587901040