Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6989 105 6e-18 seq3742 95.1 1e-14 seq8630 84.2 2e-11 >seq6989 Length=241196 Score = 105 bits (116), Expect = 6e-18 Identities = 195/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 |||| ||||| || ||||| | ||| | | || |||| ||| || || ||||| Sbjct 6541 TTCTGCATGTCTTTGCCCCACAAACCTCTGACTGTCAGATCTCGCAACAGATGCGGATTG 6482 Query 37135 ACAACCTGA--AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTT 37192 | || ||| || ||||| || || || | |||| || |||||||| || || | | Sbjct 6481 ATAA--TGACGAACTCTCCGGACAACACACGTCTTACGTAGATATTGCTGGTGTACGCCT 6424 Query 37193 CAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTA 37252 |||||||||| || || | || ||||| | || || || || ||||| ||||| || | Sbjct 6423 CAATGGACTCGTTGTTGCCCAAAATTTGCGCAGTCGACGCGGTTGGCATCGGTGCGATCA 6364 Query 37253 GAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATA 37312 || ||||||| ||| ||| | ||| || | || | |||| ||||||||||| Sbjct 6363 AGAGCGAGTTTCTCACTCCGTGTTTCGCGATTTTCGTCTTCAACTCATCCCAATCCCATA 6304 Query 37313 AATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAAT 37352 |||| || || || | || |||||| || ||||| ||||| Sbjct 6303 AATCCGTCGGCTTAACATT--CCACATGTCGTATTGCAGAAT 6264 >seq3742 Length=701801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 |||||||| ||||| | | ||| ||| | || ||||||| |||| | |||| Sbjct 290843 CCTTTACTAACTGGACTTCCCTCATAGGTCGCGTATGGTCCGTCTTCAATAGCCATTTCG 290784 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 ||||||| ||| | || ||||||| | ||||| ||||| |||| ||| | | |||| Sbjct 290783 CAACTAGCTTCCAAGGCACCATAATAAAACGTTTCAAAAATCTGTACATTGAGTTTTTTA 290724 Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACA 37533 ||||||| || || |||| ||| | || ||| ||||| |||| ||||| ||| || Sbjct 290723 GCTTCTTTACTTTCAAATGGATATCTCATTAAGATAAATGCATCTGCCAAGCCCGATGCA 290664 Query 37534 CCGATACCTA 37543 | ||||||| Sbjct 290663 CTAATACCTA 290654 >seq8630 Length=35068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||||||||| |||||||| || || || || ||||| || ||||||||||| || ||||| Sbjct 13722 ATACATTTCGGAATGAATGTTCTCTATTGCAATTTGGAAGCCATAGAAACAACGCGCCTC 13663 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 |||| || || || | |||||||| | ||| ||||| || ||||| ||| Sbjct 13662 TGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGATTTTCATTGACGATACCGTCAGA 13603 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC 12099 || ||||| || || | | || ||| || ||| |||| || | | ||||| || Sbjct 13602 AGCGGCAAAGAACGCCAACACGTGGGATATGAAATATCTTTCATCGGAATTCAATTTCTC 13543 Query 12100 C 12100 | Sbjct 13542 C 13542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468472717611920