Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8630 113 6e-20 seq6989 102 1e-16 >seq8630 Length=35068 Score = 113 bits (124), Expect = 6e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 36448 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 ||||||||| ||||||||||| || || || ||||| || || |||||||| | ||||| Sbjct 13722 ATACATTTCGGAATGAATGTTCTCTATTGCAATTTGGAAGCCATAGAAACAACGCGCCTC 13663 Query 36508 GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 | ||||| |||||| || |||| ||| | ||||||||| || || |||||| Sbjct 13662 TGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGATTTTCATTGACGATACCGTCAGA 13603 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 36609 || ||||| |||||||| || || ||| |||||| |||| Sbjct 13602 AGCGGCAAAGAACGCCAACACGTGGGATATGAAATATCTTTC 13561 >seq6989 Length=241196 Score = 102 bits (112), Expect = 1e-16 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGA 66512 |||| | || || ||||| || || || ||||||||||| || |||||| ||||| | Sbjct 4520 TAGTACAGGCGTTGAATAACGTTGGCGACGCGTGCGTAAAATATCGTTCAGACAAGTA-A 4462 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 66572 | ||||| || ||| | || ||||| | ||||| || || || || | ||| Sbjct 4461 TCATACGTTTCTATAACCTTGTTAATATCATCCTCGTGAATGCCAACAGCCACTCTCATC 4402 Query 66573 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 66632 | ||||||||| ||||| || || |||||| ||| ||||| | ||| ||| | | ||| Sbjct 4401 AGCATGTGCTGCGGTCTCTCTACTATCTTGCCGTTGATTTTGAGCAAATAGCTTCTCTCC 4342 Query 66633 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 66683 | ||||| ||||| | ||| ||||| ||||| |||| || || || ||| Sbjct 4341 AGTGTTTTGAAACCCATATAATTGTAATTGAAA--TCTCTGTCATATATTATA 4291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658099635866120