Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8630 107 3e-18 seq6989 89.7 7e-13 >seq8630 Length=35068 Score = 107 bits (118), Expect = 3e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||| ||||||||||| || || || || || || || |||||||| | ||||| Sbjct 13722 ATACATTTCGGAATGAATGTTCTCTATTGCAATTTGGAAGCCATAGAAACAACGCGCCTC 13663 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 | ||||| |||||| || |||| |||| | ||||||||| || || |||||| Sbjct 13662 TGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGATTTTCATTGACGATACCGTCAGA 13603 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTC 50411 || ||||| |||||||| || || ||| |||| | |||| Sbjct 13602 AGCGGCAAAGAACGCCAACACGTGGGATATGAAATATCTTTC 13561 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 49770 AAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTC 49829 |||||| || || | ||||||||| ||||||||||| || || || ||| | | Sbjct 15610 AAATCCTAACGCAACGAACAATCTATCTGCGACAAATTCGATGTAGGTGCACATGAGTGT 15551 Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 |||||||||||||| ||||| || || | ||| || |||||||| | ||||| Sbjct 15550 GCAATTCATTCCTATGAGTTTTACCGGCAATGCCTGTGTTAGAAATTCCTTCTCAATTTC 15491 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 49949 ||| || || | ||||| | | ||| ||| ||| || | | |||||| Sbjct 15490 TACGGCGTCCATAATAATCGTCTTGACGCGTTCAAACGAAGGTTTTTGTATGACATGTTT 15431 Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 ||||||||||||||| |||||||| |||| |||| Sbjct 15430 AAACATCAAACATGCAAAATCGCAATGCAATCCCT 15396 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/210 (69%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054 ||| || |||||| ||| ||||| || ||||| | || ||||| || ||||| || || Sbjct 15009 AATGAGCTCGTTGCTAAATGTGAGACCCGGCATCACTCCTCGCTTCTTTAGCCAGAAGAT 14950 Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 | || || ||| |||||||| ||||| ||||||||||| || || | | || Sbjct 14949 TGCTGCGAAACTACCACTGAAGAAGATACCTTCAACTGCGGCAAACGCGACTATACGTTC 14890 Query 50115 TCCATAACTGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 50171 | | | || || || || ||||| || | ||||||| ||| || || | || Sbjct 14889 CGGAAATGTTGCACTCTCGTGATTGATCCAATTAAGTGCCCAATTGGCTTTTTTAGTGAC 14830 Query 50172 ACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 |||||||| || || || |||||||| || Sbjct 14829 ACAAGGCAGAGTCTCGATCGCATTAAACAG 14800 >seq6989 Length=241196 Score = 89.7 bits (98), Expect = 7e-13 Identities = 166/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC-AGTAGA 80391 |||| | || || ||||| || || || ||||||||||| || ||||||| |||| | Sbjct 4520 TAGTACAGGCGTTGAATAACGTTGGCGACGCGTGCGTAAAATATCGTTCAGACAAGTA-A 4462 Query 80392 TTGTACGTCTCAATAGC--TGATTCTAT-ATCCCATTGATGAATTCCTACCGCGACACGC 80448 | ||||| || ||| | || | ||| |||| | ||||| || || || || | | Sbjct 4461 TCATACGTTTCTATAACCTTGTTAATATCATCC---TCGTGAATGCCAACAGCCACTCTC 4405 Query 80449 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTT 80508 || | ||||||||| ||||| || || |||||| || ||||| | ||| || | | Sbjct 4404 ATCAGCATGTGCTGCGGTCTCTCTACTATCTTGCCGTTGATTTTGAGCAAATAGCTTCTC 4345 Query 80509 TCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 80562 |||| ||||| ||||| | ||| ||||| ||||| |||| || || || ||| Sbjct 4344 TCCAGTGTTTTGAAACCCATATAATTGTAATTGAAA--TCTCTGTCATATATTATA 4291 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 79045 AGATGCGGATTAACTACTTGA--AATTCTCCAGACAATACTCTCCGAGTGTAAATATTAC 79102 ||||||||||| | | ||| || ||||| ||||| || | | ||| ||||| | Sbjct 6493 AGATGCGGATTGATAA--TGACGAACTCTCCGGACAACACACGTCTTACGTAGATATTGC 6436 Query 79103 TGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCA 79162 |||| || | || | || || || || ||||||||||| ||||| || || ||||||| Sbjct 6435 TGGTGTACGCCTCAATGGACTCGTTGTTGCCCAAAATTTGCGCAGTCGACGCGGTTGGCA 6376 Query 79163 TAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTT-ATCTTTTAGAGAT 79221 | ||||| | ||| | ||||| | |||| | |||||| |||| | | Sbjct 6375 TCGGTGCGATCAAGAGCGAGTTTCTCACTCCGTGTTTCGCGATTTTCGTCTTCAACTCA- 6317 Query 79222 TCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 ||||||||||| | ||| | ||| ||||||||| | || ||||| ||||| Sbjct 6316 TCCCAATCCCATAAATCCGTCGGCTTAACATTCCACATGTCGTATTGCAGAAT 6264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718188955444520