Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8630 104 3e-17 seq6989 89.7 7e-13 >seq8630 Length=35068 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||||||||| ||||||||||| || || || || || || || |||||||| | ||||| Sbjct 13722 ATACATTTCGGAATGAATGTTCTCTATTGCAATTTGGAAGCCATAGAAACAACGCGCCTC 13663 Query 42415 GGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 | || || |||||| || |||| |||| | |||||| || || || |||||| Sbjct 13662 TGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGATTTTCATTGACGATACCGTCAGA 13603 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 || ||||| |||||||| || || ||| |||||| |||| || Sbjct 13602 AGCGGCAAAGAACGCCAACACGTGGGATATGAAATATCTTTCATC 13558 >seq6989 Length=241196 Score = 89.7 bits (98), Expect = 7e-13 Identities = 170/243 (70%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC-AGTAGA 72474 |||| | || || ||||| || || || ||||||||||| || ||||||| |||| | Sbjct 4520 TAGTACAGGCGTTGAATAACGTTGGCGACGCGTGCGTAAAATATCGTTCAGACAAGTA-A 4462 Query 72475 TTGTACGTCTCAATAGC--TGATTCTAT-ATCCCATTGATGTATTCCTACCGCGACACGC 72531 | ||||| || ||| | || | ||| |||| | || || || || || || | | Sbjct 4461 TCATACGTTTCTATAACCTTGTTAATATCATCC---TCGTGAATGCCAACAGCCACTCTC 4405 Query 72532 ATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTT 72591 || | ||| ||||| ||||| || || |||||| || ||||| | ||| ||| | | Sbjct 4404 ATCAGCATGTGCTGCGGTCTCTCTACTATCTTGCCGTTGATTTTGAGCAAATAGCTTCTC 4345 Query 72592 TCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCG 72649 |||| ||||| ||||| | ||| ||||| ||||| |||| || || || ||| | | Sbjct 4344 TCCAGTGTTTTGAAACCCATATAATTGTAATTGAAA--TCTCTGTCATATATTATAGCAG 4287 Query 72650 AAT 72652 ||| Sbjct 4286 AAT 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671064594488680