Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3349 111 1e-19 seq8311 91.5 9e-14 >seq3349 Length=644485 Score = 111 bits (122), Expect = 1e-19 Identities = 170/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || |||| | ||| | ||||| || | || || ||||| |||||||| Sbjct 96377 AATCTGCATGCCACCTCGAAGCCGAAGTACCAAGTGAAGGGTAGATTCTTTCTGTATATT 96436 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||||||||||| | || ||| || | |||||||||| ||| || | ||| ||||| Sbjct 96437 GTAATCAGACAAAGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTG 96496 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTC 33309 || | || || ||||| || || |||| ||| || || | | |||||||| Sbjct 96497 ATCGGGTGGGATCCCTTCCTTATCTTGAATCTTTGCC---TTCACGTTCTCGATCGTGTC 96553 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | | ||| |||| ||| || ||||| ||||| | ||| || ||||| |||||||| Sbjct 96554 GGAAGCCTCAACTTCCAAAGTGATGGTTTTCCCCGTCAAAGTCTTCACGAAGATTTGCAT 96613 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||| || || || || || |||||||| || |||||| | || ||| || Sbjct 96633 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAAAGTTCGTCCGTCCTCG 96692 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | || || || ||| || | | ||||| || | || ||||||||||| || | Sbjct 96693 AGCTGTTTACCCGCAAAGATCAGTCTCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGA 96752 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | ||||| || || | | ||| ||||| | || || |||| || |||||| Sbjct 96753 ATTTTCGCC---TTCACATTCTCAATGGTGTCTGATGCTTCCACTTCCAAGGTAATCGTT 96809 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || ||||| |||||||| ||||| Sbjct 96810 TTTCCAGTCAGGGTTTTGACGAAAATCTGCAT 96841 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | || | |||||| || | || || || || || || |||||||| || Sbjct 97070 ACCACCTCGAAGTCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGA 97129 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | || ||| || | ||||||||| || || | ||| ||||| || | || Sbjct 97130 CAAAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCGGGTGG 97189 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || ||||| || || |||| |||| | || | | ||||||||| || | Sbjct 97190 GATCCCTTCCTTATCTTGAATCTTTGCCT---TCACGTTCTCGATCGTGTCGGAGGCCTC 97246 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || ||||||||||| | || || |||||||| |||||| Sbjct 97247 GACTTCGAGGGTGATGGTTTTTCCCGTTAATGTCTTCACGAAAATCTGCATG 97298 >seq8311 Length=725843 Score = 91.5 bits (100), Expect = 9e-14 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || ||||||| || ||||| || || || ||||| || || | ||||| Sbjct 133917 CGTAAGACTAAATGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGATA----GAGTTCT 133862 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || ||||| ||||| ||| ||| || ||||||||||| |||| || || || || Sbjct 133861 GCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGTTGCTGATCCGGAGGAATTCCCTC 133802 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| |||||| | | || ||||| | || ||| || ||||| Sbjct 133801 TTTGTCCTGAATTTTGGCTTTTACATTCTCTATTGTGTCAGATGCTTCAACCTCAAGAGT 133742 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| || |||||||||||||| ||||| Sbjct 133741 GATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 133703 Score = 84.2 bits (92), Expect = 1e-11 Identities = 169/248 (68%), Gaps = 16/248 (6%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || |||| | |||| |||| ||| | ||| ||||| || || ||||| Sbjct 133027 AATCTGCATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCCTTCTGGATATT 132968 Query 33193 GTAATCAGACAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248 || ||||| | ||||| ||| |||| |||||| || ||| || | ||||| Sbjct 132967 ATAGTCAGAAA----GAGTTCTGCCGTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGTT 132912 Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCG 33305 |||| || | || || || ||||| || |||| |||| |||| ||| || | Sbjct 132911 GCTGATCTGGAGGAATTCCCTCTTTATCCTGAATCTTAGCCT---TTACATTTTCTATTG 132855 Query 33306 TGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTT 33365 |||| | || || || ||||| || || || || || ||||| || || || |||| Sbjct 132854 TGTCAGAAGCTTCGACCTCAAGAGTGATGGTCTTGCCTGTGAGAGTCTTCACAAAGATTT 132795 Query 33366 GCATGTTT 33373 |||||||| Sbjct 132794 GCATGTTT 132787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318743049787914