Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8311 87.8 2e-12 seq7689 87.8 2e-12 seq3349 84.2 2e-11 >seq8311 Length=725843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48496 AAAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATC 48555 ||| |||||||| | | ||| |||||||| || ||| |||||| || |||||||| || Sbjct 133933 AAAGCCTCCGCGAAGTCGTAAGACTAAATGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 133874 Query 48556 AGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCAC 48615 | | || | || |||| |||||| || | | || ||||| ||||||||| Sbjct 133873 CGATAGAGTTCTGCCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGTTGCTGATCCGG 133814 Query 48616 CGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC 48675 || | | || |||||| |||||| || | | | |||| || || | | || Sbjct 133813 AGGAATTCCCTCTTTGTCCTGAATTTTGGCTTTTACATTCTCTATTGTGTCAGATGCTTC 133754 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| ||||| ||||| ||||| || ||||||||||| Sbjct 133753 AACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 133703 >seq7689 Length=276120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 52448 AAGAATTGGCAGCGGCTGGATTTTATTACACAGGCCATTCAGATCAAGTGAATTGCTTTT 52507 || |||| || || ||||| |||||||||||||| || |||||| | |||| | Sbjct 257003 AACAATTAGCTGCTGCTGGTTTTTATTACACAGGAAATGGTGATCAAACGTTGTGCTACT 257062 Query 52508 ATTGCGGAGGGGGTTTAAGAGATTGGAAGACTGGAGACGATCCTTGGCAACAGCACGCGC 52567 |||| ||||| || |||| ||||||| || | | ||| ||||||||| |||| || || Sbjct 257063 ATTGTGGAGGAGGATTAAAAGATTGGGAGCCAGAAGATGATCCTTGGGAACAACATGCTA 257122 Query 52568 GCTGGTTTGATAAGTGTCTGTTTTT 52592 |||||| ||| ||| |||| || Sbjct 257123 AGTGGTTTTCTAAATGT-TGTTATT 257146 >seq3349 Length=644485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 ||||| ||||| || ||||| ||||||||||| || | || | || || ||||||| Sbjct 96177 ACTAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGACAGAGTG-CGTCCGTCCTC 96235 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| ||||| | | || | | ||||||||| ||| | | ||| ||||| Sbjct 96236 GAGCTGTTTACCCGCAAATATGAGCCTCTGCTGATCAGGCGGGATTCCTTCTTTGTCTTG 96295 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || || | | | | |||||||||| | ||| ||| | || ||||| || Sbjct 96296 AATCTTAGCTTTCACATTCTCGATGGTATCGGAGGCCTCGACCTCCAACGTGATGGTCTT 96355 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||||||||| ||||||||||| Sbjct 96356 CCCCGTCAAAGTTTTCACGAAAATCTGCAT 96385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| || ||||| |||||||||||||| | ||| || ||||||| Sbjct 97088 CACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGACAAAGTACGTCCGTCCTC 97147 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| || | || | |||||||||||| || | | |||||| || Sbjct 97148 GAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCGGGTGGGATCCCTTCCTTATCTTG 97207 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | | || || |||| | ||| |||| || |||||||| Sbjct 97208 AATCTTTGCCTTCACGTTCTCGATCGTGTCGGAGGCCTCGACTTCGAGGGTGATGGTTTT 97267 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || | || ||||| ||||||||||| ||| Sbjct 97268 TCCCGTTAATGTCTTCACGAAAATCTGCATGGTG 97301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421205543346893