Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7686 212 1e-50 seq5157 185 1e-42 >seq7686 Length=992852 Score = 212 bits (234), Expect = 1e-50 Identities = 191/240 (80%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| ||||||||||| || ||||| ||||| || ||| Sbjct 150800 GCGAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAGGGTATCACGAAGCCTGCCATC 150741 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||||||||||||||| || |||||| |||| || ||| | || ||||| | | Sbjct 150740 CGTCGTCTGGCTCGTCGTGGTGGTGTGAAGCGTATCTCCGGCTTGATTTACGAAGAAACT 150681 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | |||||| ||| ||| |||| |||||| || ||| |||||| Sbjct 150680 CGCGGTGTGCTGAAGGTGTTCCTCGAGAACGTCATCCGCGATGCTGTCACCTACACCGAG 150621 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| |||||| ||||||| |||| || || ||||||| |||||| Sbjct 150620 CACGCAAAACGGAAGACCGTCACCGCCATGGACGTCGTATACGCCCTGAAACGCCAAGGC 150561 >seq5157 Length=471682 Score = 185 bits (204), Expect = 1e-42 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | ||||| ||||||||||| || ||||||||||| ||||| Sbjct 329202 GCGAAGCGGCATCGCAAAGTACTTCGCGATAACATCCAGGGTATCACCAAGCCTGCTATT 329261 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || |||||||| || ||||||||| | ||||| ||| |||| ||||| | | Sbjct 329262 CGACGTCTTGCACGTCGTGGCGGTGTCAAGCGTATTTCTGGCTTGATCTACGAAGAAACT 329321 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| ||| || || || || ||| Sbjct 329322 CGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCGGTCACTTACACAGAG 329381 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| || ||| ||||||| | ||||| ||| | ||||||||||| Sbjct 329382 CATGCCAAGAGGAAGACCGTGACCGCCATGGACGTTGTCTACGCACTCAAACGTCAAGGA 329441 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | ||||||| || || ||||| Sbjct 329442 AGAACCCTTTATGGCTTCGGCGGTTAA 329468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067069067849