Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq1128 109 7e-20 >seq1128 Length=54329 Score = 109 bits (120), Expect = 7e-20 Identities = 225/326 (69%), Gaps = 13/326 (4%) Strand=Plus/Minus Query 12230 CTTTC--ATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATGC 12287 ||||| ||| ||||| || | || | || ||| || |||||||| | ||||| | Sbjct 26215 CTTTCTGATCGAAGAACGCAAGCGCAATAGCTTCAGGACTTAAATACAATAAATGATTAA 26156 Query 12288 TAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGTT 12347 ||| |||||||| || || |||||| ||| ||| | |||||| || ||| | Sbjct 26155 CAAACTTTTTCAAAGCAACGCGAGATATAGTAGAATCAACGGTTTGATAGCGAACAAGCT 26096 Query 12348 CCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGG---ACAAGTGAACC 12404 ||||||||| ||||| | ||| || |||||| || |||| |||| |||| Sbjct 26095 TTTTTAAAAATTGCAAATCGTGATTCGGTGCTTCAACAGCACGAGGTGCACAA---AACC 26039 Query 12405 ATGCTTTGATATACACTG-TAGCAATAAAAACACAAATTTCAGAAACGG-ATTTGATTAA 12462 | |||| ||||| | || || | ||||| | ||| || ||||||| | || || | Sbjct 26038 AAGCTTGAATATA-AGTGCTAACGATAAATAAACATATATCAGAAAAACCACTTTTTTCA 25980 Query 12463 TTTCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTT 12522 || | | || | |||||| | | ||| || || ||||| |||| |||| || ||||| Sbjct 25979 TT-CGCTGTTAATTTGAACTCATCACGGAACAAGAATATCTTTAAGCTATAAATAGCTTT 25921 Query 12523 TGCCATCCACCTAGCGTGGTGGAATG 12548 |||||||||||| || || | ||||| Sbjct 25920 TGCCATCCACCTCGCATGAT-GAATG 25896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63299090581897