Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8630 109 7e-19 seq6989 102 1e-16 >seq8630 Length=35068 Score = 109 bits (120), Expect = 7e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 ||||||||| ||||||||||| || || || || || || || |||||||| | ||||| Sbjct 13722 ATACATTTCGGAATGAATGTTCTCTATTGCAATTTGGAAGCCATAGAAACAACGCGCCTC 13663 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 | ||||| |||||| || |||| ||| | ||||||||| || || |||||| Sbjct 13662 TGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGATTTTCATTGACGATACCGTCAGA 13603 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 33758 || ||||| |||||||| || || ||| |||||| |||| || Sbjct 13602 AGCGGCAAAGAACGCCAACACGTGGGATATGAAATATCTTTCATC 13558 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33114 AAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTC 33173 |||||| || || | ||||||||| ||||| ||||| || || || ||| | | Sbjct 15610 AAATCCTAACGCAACGAACAATCTATCTGCGACAAATTCGATGTAGGTGCACATGAGTGT 15551 Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 |||||||||||||| ||||| || || | ||| || |||||||| | ||||| Sbjct 15550 GCAATTCATTCCTATGAGTTTTACCGGCAATGCCTGTGTTAGAAATTCCTTCTCAATTTC 15491 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 33293 ||| || || | ||||| | | ||| ||| ||| || | | |||||| Sbjct 15490 TACGGCGTCCATAATAATCGTCTTGACGCGTTCAAACGAAGGTTTTTGTATGACATGTTT 15431 Query 33294 AAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 ||||||||||||||| |||||||| |||| |||| Sbjct 15430 AAACATCAAACATGCAAAATCGCAATGCAATCCCT 15396 >seq6989 Length=241196 Score = 102 bits (112), Expect = 1e-16 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGA 63668 |||| | || || ||||| || || || ||||||||||| || |||||| ||||| | Sbjct 4520 TAGTACAGGCGTTGAATAACGTTGGCGACGCGTGCGTAAAATATCGTTCAGACAAGTA-A 4462 Query 63669 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63728 | ||||| || ||| | || ||||| | ||||| || || || || | ||| Sbjct 4461 TCATACGTTTCTATAACCTTGTTAATATCATCCTCGTGAATGCCAACAGCCACTCTCATC 4402 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | ||||||||| ||||| || || |||||| ||| ||||| | ||| ||| | | ||| Sbjct 4401 AGCATGTGCTGCGGTCTCTCTACTATCTTGCCGTTGATTTTGAGCAAATAGCTTCTCTCC 4342 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATA 63839 | ||||| ||||| | ||| ||||| ||||| |||| || || || ||| Sbjct 4341 AGTGTTTTGAAACCCATATAATTGTAATTGAAA--TCTCTGTCATATATTATA 4291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622877951631880