Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8630 132 5e-26 seq3184 122 1e-22 seq3420 116 4e-21 >seq8630 Length=35068 Score = 132 bits (146), Expect = 5e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | || ||||||||||| ||||| | ||||| |||||||||||| Sbjct 13745 ATGTAGGTTTCGATGAGCAATGAATACATTTCGGAATGAATGTTCTCTATTGCAATTTGG 13686 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | || || | |||| |||||||| | ||||| || | ||| Sbjct 13685 AAGCCATAGAAACAACGCGCCTCTGAAATCTTAACTTCTTGGCAGAATCTTTCAATAAGA 13626 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| ||||| || || || ||||| || ||||| | || ||| |||| | Sbjct 13625 TTTTCATTGACGATACCGTCAGAAGCGGCAAAGAACGCCAACACGTGGGATATGAAATAT 13566 Query 93542 TTCTCATC 93549 | ||||| Sbjct 13565 CTTTCATC 13558 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 |||||||| | |||||||| || || | |||||||||||||||||||| || || || Sbjct 13423 ACTTCTTCTATGGTCCAAAAAGAAGCAACAGCTTTTTTGTACATATCCCAAATATCAGGA 13364 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGG 93684 ||| |||| ||||| || |||||||| || || Sbjct 13363 TATCGAATAGGAAAGATTACAAAACGGTTTGG 13332 >seq3184 Length=1978266 Score = 122 bits (134), Expect = 1e-22 Identities = 83/91 (91%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 1976444 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 1976503 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||| | || || Sbjct 1976504 GTTCGAACCCCACACCTGGCAAACTTTTTTT 1976534 >seq3420 Length=1343423 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 609880 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 609821 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||||| || || Sbjct 609820 GTTCGAACCCCACACTTAGCAAATTTTTTTT 609790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556798897961320