Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq3349 111 1e-19 seq8311 89.7 4e-13 >seq3349 Length=644485 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| | || || ||||| |||||| ||||| |||||| || Sbjct 96841 ATGCAGATTTTCGTCAAAACCCTGACTGGAAAAACGATTACCTTGGAAGTGGAAGCATCA 96782 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | ||| |||||| || ||||| || | ||||| | Sbjct 96781 GACACCATTGAGAATGTGAAGGCGAAAATTCAAGACAAAGAAGGCATTCCACCTG---AT 96725 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| |||||||| || ||||| || || || | |||| || | || ||| Sbjct 96724 CAGCAGAGACTGATCTTTGCGGGTAAACAGCTCGAGGACGGACGAACTTTGTCAGACTAC 96665 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||||||||||||||||||||| ||| ||||| Sbjct 96664 AATATTCAGAAGGAATCTACTCTGCATTTGGTA 96632 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 21826 AGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGG 21885 || ||| ||||| || || | || ||||||||||| |||||||| ||| | ||| | Sbjct 97305 AGAGCACCATGCAGATTTTCGTGAAGACATTAACGGGAAAAACCATCACCCTCGAAGTCG 97246 Query 21886 AAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTG 21945 | ||| | || ||| | | | | ||| ||| ||| ||||| || || | || Sbjct 97245 AGGCCTCCGACACGATCGAGAACGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCAC 97186 Query 21946 TAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCG 22005 | || ||| | || ||||| || || || ||||| || || | ||| || ||| Sbjct 97185 CCGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGACGTACTTTGTCCG 97126 Query 22006 ATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||| ||||||||||||||||| ||||| |||| | || | ||||| || Sbjct 97125 ATTACAACATTCAGAAGGAATCTACCCTTCACTTGGTGCTTCGACTTCGAGGTGG 97071 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || ||||| || || ||||| || |||| ||||| | Sbjct 95017 ATGCAGATCTTCGTGAAGACTTTAACAGGAAAGACCATCACGTTGGAGGTTGAAGCATCC 94958 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||| || ||||||||| | ||| | || Sbjct 94957 GACACCATCGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCTCCCGATCAG 94898 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | |||||||| || |||||||||||||| | || || |||||||||| Sbjct 94897 CAAAGATTAATCTTTGCGGGTAAACAACTAGAAGACGGACGCACCTTGTCCGATTACAAC 94838 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| || |||||||| ||||| | ||| | ||| | |||| || Sbjct 94837 ATTCAAAAAGAATCTACGCTTCACCTTGTACTTCGTCTCAGAGGTGG 94791 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || ||||| |||||||| || ||||| || || | Sbjct 96613 ATGCAAATCTTCGTGAAGACTTTGACGGGGAAAACCATCACTTTGGAAGTTGAGGCTTCC 96554 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | ||| ||| ||| ||||| || || | || | || Sbjct 96553 GACACGATCGAGAACGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCCGATCAG 96494 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || ||||||||||| || ||||| ||||| | ||| || | ||||||||| Sbjct 96493 CAGCGTCTCATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACTTTGTCTGATTACAAT 96434 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| |||||||| ||||| ||||| | || | ||||| || Sbjct 96433 ATACAGAAAGAATCTACCCTTCACTTGGTACTTCGGCTTCGAGGTGG 96387 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || ||||| || || ||||| || |||| ||||| | Sbjct 95473 ATGCAGATCTTCGTGAAGACTTTAACAGGAAAGACCATCACGTTGGAGGTTGAAGCATCC 95414 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||| || ||||||||| | ||| | || Sbjct 95413 GACACCATCGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCTCCCGATCAG 95354 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | |||||||| || |||||||||||||| | || || | |||||||| Sbjct 95353 CAAAGATTAATCTTTGCGGGTAAACAACTAGAAGACGGACGCACCCTGTCTGATTACAAC 95294 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| ||||| || ||||| ||||| | || | ||||| || Sbjct 95293 ATCCAGAAAGAATCCACCCTTCACCTGGTACTTCGACTTCGAGGTGG 95247 >seq8311 Length=725843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 177/259 (68%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 21805 ATTGTCA-TATTTATAAGTAATAGTGCAAA-ATGCAAATATTTATTAAAACATTAACGGG 21862 ||||||| ||||| || ||| |||| |||||||| ||| | || || | || || Sbjct 132763 ATTGTCAATATTTT---GTTTTAGATCAAACATGCAAATCTTTGTGAAGACTCTCACAGG 132819 Query 21863 CAAAACCATTACCGTGGAAACGGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAAT 21922 ||| ||||| || | || ||||| | || || | | || | ||| || || Sbjct 132820 CAAGACCATCACTCTTGAGGTCGAAGCTTCTGACACAATAGAAAATGTAAAGGCTAAGAT 132879 Query 21923 TGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACT 21982 | ||||||||||| | ||| | | || || | || |||||||| ||||| ||||| Sbjct 132880 TCAGGATAAAGAGGGAATTCCTCCAGATCAGCAACGTCTGATCTTTGCCGGCAAGCAACT 132939 Query 21983 AGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||| | |||| | | || || ||||| |||||||| || || |||||| |||| Sbjct 132940 GGAAGACGGCAGAACTCTTTCTGACTATAATATCCAGAAGGAGTCCACACTTCATCTGGT 132999 Query 22043 ATTACGTTTACGAGGAGGA 22061 | ||| | ||||||||| Sbjct 133000 TCTGCGTCTTCGAGGAGGA 133018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358085985203122