Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8311 98.7 8e-16 seq7323 98.7 8e-16 >seq8311 Length=725843 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || ||||| ||||||||||| ||| ||||||||| || || || || | Sbjct 133017 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCCTTCTGGATATTATAGTCAGAA 132958 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||||||||||||| ||||| || |||||||| || Sbjct 132957 AGAGTTCTGCCGTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGTTGCTGATCTGGAGGA 132898 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | |||||| ||| ||| || ||| | | | |||| || |||| Sbjct 132897 ATTCCCTCTTTATCCTGAATCTTAGCCTTTACATTTTCTATTGTGTCAGAAGCTTCGACC 132838 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAAT 34134 || | || || || || || || || || ||||||||||||||||| ||| || Sbjct 132837 TCAAGAGTGATGGTCTTGCCTGTGAGAGTCTTCACAAAGATTTGCATGTTTGAT 132784 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || ||||| ||||||||||| ||| ||||||||| || || || || | Sbjct 133245 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCCTTCTGGATATTATAGTCAGAA 133186 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || |||||||| ||||| || ||||| || ||||||||| || Sbjct 133185 AGAGTTCTGCCGTCTTCTAATTGCTTTCCGGCGAAGATCAGACGTTGCTGATCCGGAGGA 133126 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | | |||||||||| ||||| Sbjct 133125 ATTCCCTCTTTGTCCTGGATTTT 133103 >seq7323 Length=11444 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 11389 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 11330 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 11329 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 11290 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 11389 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 11330 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 11329 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 11290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397019365012186