Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3349 105 7e-18 seq8722 100 3e-16 seq6447 98.7 1e-15 seq6770 93.3 5e-14 seq4201 91.5 2e-13 seq8311 89.7 6e-13 seq1306 89.7 6e-13 seq2609 87.8 2e-12 seq2671 86.0 7e-12 >seq3349 Length=644485 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || ||||||||||||| || ||| || |||| || || ||||| ||||| || Sbjct 96423 TCTTTCTGTATATTGTAATCAGACAAAGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAG 96482 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 ||||| |||||||| |||| ||| | | ||||| | | ||| | |||| || | | Sbjct 96483 ATGAGACGCTGCTGATCGGGTGGGATCCCTTCCTTAT-CTTGAATCTTTGCCTTCACGTT 96541 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||||| | || || || | ||||||||||| ||||| | ||||| || Sbjct 96542 CTCGATCGTGTCGGAAGCCTCAACTTCCAAAGTGATGGTTTTCCCCGTCAAAGTCTTCAC 96601 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 96602 GAAGATTTGCAT 96613 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| |||||||| | || ||| || |||| || || ||||| || ||||| Sbjct 97107 TCCTTCTGAATGTTGTAATCGGACAAAGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAG 97166 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT- 42136 ||||| |||||||| |||| ||| | | ||||| || ||| | |||| | ||| Sbjct 97167 ATGAGACGCTGCTGATCGGGTGGGATCCCTTCCTTATCT-TGAATCTTTGCCTTCACGTT 97225 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||||| | || || |||| ||||||||||| ||||||| ||||| || Sbjct 97226 CTCGATCGTGTCGGAGGCCTCGACTTCGAGGGTGATGGTTTTTCCCGTTAATGTCTTCAC 97285 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 97286 GAAAATCTGCAT 97297 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | ||| || || || ||||||||||||| ||| ||||| | || || Sbjct 95720 CACCAGATGGAGGGTGGATTCTTTCTGGATATTGTAATCAGACAGGGTCCGTCCATCCTC 95779 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| ||||| ||||| || |||| ||||||||||| ||| | | || ||| | | Sbjct 95780 GAGCTGTTTACCCGCGAAGATCAGTCTCTGCTGGTCGGGTGGAATTC-CTTCTTTATCTT 95838 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || | |||| || | | |||||| | || || || | ||| || || | Sbjct 95839 GAATCTTCGCCTTGACATTCTCGATGGTGTCGGAAGCCTCGACCTCCAACGTAATCGTCT 95898 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| || || || |||||||| Sbjct 95899 TTCCGGTTAGCGTTTTGACGAAAATTTGCAT 95929 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | || | ||||| ||| | ||| || || || ||||||||||||| Sbjct 95474 ACCACCTCGAAGTCGAAGCACCAGATGGAGGGTGGATTCTTTCTGGATATTGTAATCAGA 95533 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| ||||| | || || ||||| ||||| || || || || | |||||| |||| ||| Sbjct 95534 CAGGGTCCGTCCATCCTCGAGCTGTTTACCCGCAAAGATCAGCCTCTGCTGATCGGGTGG 95593 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||| | ||| | || | |||| || | | |||||| | || | Sbjct 95594 AATTCCTTCTTTGT-CTTGAATCTTCGCCTTGACATTCTCGATGGTGTCGGAAGCCTCGA 95652 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||| || || || || |||||||| || || || |||||||| Sbjct 95653 CCTCCAACGTAATCGTCTTTCCGGTTAGCGTTTTGACGAAAATTTGCAT 95701 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| || ||||| ||||||||||| || | || ||| || |||| || Sbjct 96633 ACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAAAGTTCGTCCGTCCTCG 96692 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| ||||| || || || |||| |||||| || | ||| | || || |||| | || Sbjct 96693 AGCTGTTTACCCGCAAAGATCAGTCTCTGCTGATCAGGTGGAATGCCTTCTTTGT-CTTG 96751 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||| | || | || | | ||||| | |||||| || | || || ||||| Sbjct 96752 AATTTTCGCCTTCACATTCTCAATGGTGTCTGATGCTTCCACTTCCAAGGTAATCGTTTT 96811 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || || || || ||||| Sbjct 96812 TCCAGTCAGGGTTTTGACGAAAATCTGCAT 96841 >seq8722 Length=295648 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 220225 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 220166 Query 57065 TATACTACCGAGGAT 57079 ||||||||||||||| Sbjct 220165 TATACTACCGAGGAT 220151 >seq6447 Length=1093865 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 787943 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 787884 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 787883 TACTACCGAGGATT 787870 >seq6770 Length=222752 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| ||||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 217847 AAAAGATTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 217788 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 217787 TAACCACTATACTATCGAGGA 217767 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 56449 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 56390 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 56389 TACTATCGAGGATT 56376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | |||||||||| ||||||||||||| ||||||| |||| Sbjct 53316 AAAAAAATACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGCCAGGCGGGGATAC 53375 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 53376 TAACCACTATACTATCGAGGA 53396 >seq4201 Length=319496 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || ||||||| | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 138137 TTCCTCCTCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 138078 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 138077 CTATACTATCGAGGA 138063 >seq8311 Length=725843 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||||| |||| ||| | |||| |||||| || ||||| || |||| Sbjct 133017 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCCTTCTGGATATTATAGTCAGAA 132958 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | |||| || || ||||| || || || || || || ||||| || | || Sbjct 132957 AGAGTTCTGCCGTCTTCCAGTTGCTTGCCGGCAAAGATCAGACGTTGCTGATCTGGAGGA 132898 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| || ||| ||| | || | || | | | | ||||| | ||| || Sbjct 132897 ATTCCCTCTTTATCC-TGAATCTTAGCCTTTACATTTTCTATTGTGTCAGAAGCTTCGAC 132839 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| ||||| || || ||||| |||||||||||||| || Sbjct 132838 CTCAAGAGTGATGGTCTTGCCTGTGAGAGTCTTCACAAAGATTTGCATGTT 132788 >seq1306 Length=384595 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 260408 CTCCTCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 260349 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 260348 TACTATCGAGGA 260337 >seq2609 Length=418247 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 56998 AAAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||||| | |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 28185 AAAAATTAAATACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 28244 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 28245 TACTAACCACTATACTATCGAGGA 28268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 28502 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 28561 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 28562 TACTATCGAGGA 28573 >seq2671 Length=793039 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 333246 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 333305 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 333306 TACTATCGAGGA 333317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543152415107120