Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3349 122 7e-23 seq8311 114 1e-20 seq2953 113 3e-20 >seq3349 Length=644485 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | |||||||| || || || || ||||||||||| || || Sbjct 96615 CCGCCACGAAGTCGGAGTACCAAATGCAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 96674 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | |||| |||| || | ||| ||||| ||||| ||||||| ||| ||||| | ||| Sbjct 96675 AAAGTTCGTCCGTCCTCGAGCTGTTTACCCGCAAAGATCAGTCTCTGCTGATCAGGTGGA 96734 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| ||| || || ||| | | | ||||| || ||||| Sbjct 96735 ATGCCTTCTTTGTCTTGAATTTTCGCCTTCACATTCTCAATGGTGTCTGATGCTTCCACT 96794 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||||||||||| |||| ||||| || ||||||||||| Sbjct 96795 TCCAAGGTAATCGTTTTTCCAGTCAGGGTTTTGACGAAAATCTGCAT 96841 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||||| || |||||||||||||| || | || Sbjct 95484 AGTCGAAGCACCAGATGGAGGGTGGATTCTTTCTGGATATTGTAATCAGACAGGGTCCGT 95543 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| ||||| ||||| ||||| | ||| ||||| | |||| || || Sbjct 95544 CCATCCTCGAGCTGTTTACCCGCAAAGATCAGCCTCTGCTGATCGGGTGGAATTCCTTCT 95603 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || ||||| ||||||| |||| Sbjct 95604 TTGTCTTGAATCTTCGCCTTGACATTCTCGATGGTGTCGGAAGCCTCGACCTCCAACGTA 95663 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || | ||||| || ||||| ||||| Sbjct 95664 ATCGTCTTTCCGGTTAGCGTTTTGACGAAAATTTGCAT 95701 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||||| ||| || ||| ||||| || |||||||||||||| || | || Sbjct 95712 AGCCGAAGCACCAGATGGAGGGTGGATTCTTTCTGGATATTGTAATCAGACAGGGTCCGT 95771 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| ||||| || || ||||||| ||| || || | |||| || || Sbjct 95772 CCATCCTCGAGCTGTTTACCCGCGAAGATCAGTCTCTGCTGGTCGGGTGGAATTCCTTCT 95831 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || ||||| ||||||| |||| Sbjct 95832 TTATCTTGAATCTTCGCCTTGACATTCTCGATGGTGTCGGAAGCCTCGACCTCCAACGTA 95891 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || | ||||| || ||||| ||||| Sbjct 95892 ATCGTCTTTCCGGTTAGCGTTTTGACGAAAATTTGCAT 95929 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||| || || ||| | || |||| || | ||| ||||| |||||| Sbjct 96195 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCGAGCTGTTTACCCGCAAAT 96254 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | || | || || ||||| |||||| ||| ||| Sbjct 96255 ATGAGCCTCTGCTGATCAGGCGGGATTCCTTCTTTGTCTTGAATCTTAGCTTTCACATTC 96314 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||| ||||||| ||| || || || |||||||||||||| || Sbjct 96315 TCGATGGTATCGGAGGCCTCGACCTCCAACGTGATGGTCTTCCCCGTCAAAGTTTTCACG 96374 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 96375 AAAATCTGCAT 96385 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||||| || || |||||||| || || || || ||| Sbjct 96843 CCACCGCGTAGACGAAGAACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCGGAT 96902 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | || || || ||||| |||| || ||||||||||| ||| Sbjct 96903 AACGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCCGGGGGG 96962 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || |||||| || ||| | | || || || ||||| ||| Sbjct 96963 ATTCCTTCCTTATCCTGAATCTTCGCCTTGACATTTTCAATAGTGTCGGAAGCCTCAACC 97022 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| || || || ||||| ||||| || || || |||||||| Sbjct 97023 TCCAACGTGATGGTCTTCCCCGTTAAAGTCTTCACGAAGATCTGCAT 97069 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||||| || || || ||||| || |||||||||||||| | | | || Sbjct 96396 AGCCGAAGTACCAAGTGAAGGGTAGATTCTTTCTGTATATTGTAATCAGACAAAGTACGT 96455 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667 |||| || | ||||| || ||||| || || ||||| ||||| |||||| | || || Sbjct 96456 CCGTCTTCAAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGGGATC-CCTTC 96514 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || ||||||| || || | | | || || ||||| || |||| || Sbjct 96515 CTTATCTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAAGCCTCAACTTCCAAAGT 96574 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||||||||| || || || || ||||| Sbjct 96575 GATGGTTTTCCCCGTCAAAGTCTTCACGAAGATTTGCAT 96613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || || || ||||| |||||||| || | | | || Sbjct 97080 AGTCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCGGACAAAGTACGT 97139 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 |||| || | ||||| ||||| || || || ||||| ||||| | ||||| | || || Sbjct 97140 CCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCGGGTGGGATC-CCTTC 97198 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || ||||||| || || | | | || || ||||| || || | || Sbjct 97199 CTTATCTTGAATCTTTGCCTTCACGTTCTCGATCGTGTCGGAGGCCTCGACTTCGAGGGT 97258 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||||||||| || || || || ||||||||||| ||| Sbjct 97259 GATGGTTTTTCCCGTTAATGTCTTCACGAAAATCTGCATGGTG 97301 >seq8311 Length=725843 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| |||||| ||| || || || ||||| || |||||| ||| Sbjct 133920 AGTCGTAAGACTAAATGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGATAGAGTTCTG 133861 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| || || ||||||| |||| ||||| Sbjct 133860 CCATCTTCCAACTGCTTGCCAGCAAAGATCAAACGTTGCTGATCCGGAGGAATTCCCTCT 133801 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||||| | | | || || || || ||||| | || Sbjct 133800 TTGTCCTGAATTTTGGCTTTTACATTCTCTATTGTGTCAGATGCTTCAACCTCAAGAGTG 133741 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | |||||||| ||||||||||| Sbjct 133740 ATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 133703 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| ||| || || ||||| || ||||| ||| ||| Sbjct 133236 AGACGCAGAACCAGATGAAGTGTGGACTCCTTCTGGATATTATAGTCAGAAAGAGTTCTG 133177 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || || ||||| ||||| || ||||| || || ||||||| |||| ||||| Sbjct 133176 CCGTCTTCTAATTGCTTTCCGGCGAAGATCAGACGTTGCTGATCCGGAGGAATTCCCTCT 133117 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||||||| | | | || || || || ||||| | || Sbjct 133116 TTGTCCTGGATTTTAGCTTTTACATTCTCTATTGTGTCAGATGCTTCAACCTCAAGAGTG 133057 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||| | ||| |||| ||||||||||| Sbjct 133056 ATGGTCTTACCCGCGAGGGTTCTTACGAAAATCTGCAT 133019 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||| ||| || ||| ||| || || || || || ||||| ||| ||| Sbjct 133464 AGACGCAAAACCAGATGAAGTGTGGACTCCTTCTGGATGTTATAGTCAGAAAGAGTTCTG 133405 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || || ||||| ||||| || ||||| || |||||||||| |||| ||||| Sbjct 133404 CCGTCTTCTAATTGCTTTCCGGCGAAGATCAGACGTTGTTGATCCGGAGGAATTCCCTCT 133345 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || ||||||| | | | || || || || ||||| | || Sbjct 133344 TTATCCTGGATTTTAGCTTTTACATTCTCTATTGTGTCAGATGCTTCAACCTCAAGAGTG 133285 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||| | ||| |||| ||||||||||| Sbjct 133284 ATGGTCTTACCCGCGAGGGTTCTTACGAAAATCTGCAT 133247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| |||||| || || || || ||||| ||| ||| Sbjct 133692 AGACGCAGAACCAGATGAAGTGTGGACTCTTTCTGGATGTTATAGTCAGAAAGAGTTCTG 133633 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| ||||| || ||||| || || ||||| | |||| || || Sbjct 133632 CCATCTTCTAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCAGGAGGAATACCTTCT 133573 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| |||||| | | | || ||||| || ||||| | || Sbjct 133572 TTGTCTTGTATTTTTGCCTTTACATTCTCTATTGTGTCAGACGCTTCAACCTCAAGAGTG 133513 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | |||||||| ||||||||||| Sbjct 133512 ATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCAT 133475 >seq2953 Length=1164165 Score = 113 bits (124), Expect = 3e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||||||||| || |||||||||| | | || | || || ||||| || ||||| || | Sbjct 120061 CTTTTTGAATGTTATAATCAGATAAAGTACGCCCATCCTCTAACTGTTTGCCGGCGAAGA 120002 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 |||||||||||||||| | |||| ||||| ||||| |||||| ||| ||| Sbjct 120001 TCAGTCGCTGTTGATCTGGTGGAATCCCCTCTTTGTCTTGAATCTTAGCTTTCACATTTT 119942 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | | || || || || ||||| | ||||| || || ||||| | ||||| || | Sbjct 119941 CGATGGTATCGGATGCTTCTACCTCGAGGGTAATTGTCTTACCCGTGAGGGTTTTCACGA 119882 Query 48757 AAATCTGCAT 48766 |||||||||| Sbjct 119881 AAATCTGCAT 119872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380896312673439