Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3349 91.5 1e-13 seq8719 84.2 2e-11 seq4549 84.2 2e-11 >seq3349 Length=644485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| | || || ||||| |||||| ||| |||| | ||| Sbjct 96841 ATGCAGATTTTCGTCAAAACCCTGACTGGAAAAACGATTACCTTGGAAGTGGAAGCATCA 96782 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| |||||||| || | || ||||| Sbjct 96781 GACACCATTGAGAATGTGAAGGCGAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 96722 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| ||||||||||| ||||| | || || |||| || | || || || Sbjct 96721 CAGAGACTGATCTTTGCGGGTAAACAGCTCGAGGACGGACGAACTTTGTCAGACTACAAT 96662 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTA 28763 ||||| || |||||||||||||| ||||| Sbjct 96661 ATTCAGAAGGAATCTACTCTGCATTTGGTA 96632 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || |||||||| || ||||| || || || |||| Sbjct 97069 ATGCAGATCTTCGTGAAGACTTTAACGGGGAAGACCATCACGTTGGAGGTTGAGGCTTCC 97010 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || || || || || ||| | ||| |||||| Sbjct 97009 GACACTATTGAAAATGTCAAGGCGAAGATTCAGGATAAGGAAGGAATCCCCCCGGATCAA 96950 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || |||||| | |||||| | || | |||| |||||| Sbjct 96949 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTCGCACGTTATCCGACTATAAC 96890 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||||||||| |||||||| |||| Sbjct 96889 ATCCAAAAAGAATCGACTCTGCATTTGGT 96861 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || ||||| || || ||||| || || ||| | || Sbjct 95017 ATGCAGATCTTCGTGAAGACTTTAACAGGAAAGACCATCACGTTGGAGGTTGAAGCATCC 94958 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||||||||| | || ||||| Sbjct 94957 GACACCATCGAGAATGTTAAGGCGAAAATCCAAGACAAAGAGGGTATCCCTCCCGATCAG 94898 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | ||||||||||| |||||| | ||||| || || ||||||| ||| Sbjct 94897 CAAAGATTAATCTTTGCGGGTAAACAACTAGAAGACGGACGCACCTTGTCCGATTACAAC 94838 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTA 28763 ||||||||||||||||| || ||| | ||| Sbjct 94837 ATTCAAAAAGAATCTACGCTTCACCTTGTA 94808 >seq8719 Length=610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| ||||||||||| | || ||||| || ||| | ||||||||||| ||| Sbjct 60 AAAATCCAAGACAAAGAGGGTATCCCTCCCGATCAGCAAAGATTAATCTTTGCGGGTAAA 119 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||| | ||||| || || ||||||| |||||||||||||||||||| || ||| Sbjct 120 CAACTAGAAGACGGACGCACCTTGTCCGATTACAACATTCAAAAAGAATCTACGCTTCAC 179 Query 28758 ATGGTA 28763 | ||| Sbjct 180 CTTGTA 185 >seq4549 Length=1308415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||||||||| ||||| ||||| || || |||||| |||||||| | |||| | | || Sbjct 663388 AGATCAACAAAGACTGATCTTCGCTGGAAAACAACTGGAAGATGGGAGAACTTTATCTGA 663329 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||||||||| |||||| | || | || || | || ||||| || Sbjct 663328 CTATAACATTCAAAAAGAGTCTACTTTACATTTAGTGTTGCGCTTGCGAGGTGG 663275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425358693165447