Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3349 127 4e-24 seq5300 113 8e-20 seq8311 102 1e-16 seq4549 98.7 2e-15 >seq3349 Length=644485 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| |||||| | |||||| || | |||| || || ||| || || || Sbjct 96156 ATACCACCTCGAAGTCGAAGTACTAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCG 96215 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || | |||||||| ||||| || | ||||| || ||||| Sbjct 96216 GACAGAGTGCGTCCGTCCTCGAGCTGTTTACCCGCAAATATGAGCCTCTGCTGATCAGGC 96275 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || ||| ||| ||||| || ||||| || | || Sbjct 96276 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTCACATTCTCGATGGTATCGGAGGCCTCG 96335 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || || || ||||| | ||| |||||||| Sbjct 96336 ACCTCCAACGTGATGGTCTTCCCCGTCAAAGTTTTCACGAAAATCTGCAT 96385 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | ||| | ||||| || ||||| || Sbjct 96840 ATACCACCGCGTAGACGAAGAACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCG 96899 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || | |||||| |||||||| || ||||||||||| || || Sbjct 96900 GATAACGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGATCCGGG 96959 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| ||||| || || || || ||||| ||||| || || | || Sbjct 96960 GGGATTCCTTCCTTATCCTGAATCTTCGCCTTGACATTTTCAATAGTGTCGGAAGCCTCA 97019 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || ||||| || || | ||| |||||||| Sbjct 97020 ACCTCCAACGTGATGGTCTTCCCCGTTAAAGTCTTCACGAAGATCTGCAT 97069 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| |||||| | || | ||| | || | ||||| ||||| ||||| Sbjct 95472 ATACCACCTCGAAGTCGAAGCACCAGATGGAGGGTGGATTCTTTCTGGATATTGTAATCA 95531 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | |||||||| ||||| || | ||||| || || ||| Sbjct 95532 GACAGGGTCCGTCCATCCTCGAGCTGTTTACCCGCAAAGATCAGCCTCTGCTGATCGGGT 95591 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || || ||||| || || || || | || Sbjct 95592 GGAATTCCTTCTTTGTCTTGAATCTTCGCCTTGACATTCTCGATGGTGTCGGAAGCCTCG 95651 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||| || || || |||| ||||| | ||| || ||||| Sbjct 95652 ACCTCCAACGTAATCGTCTTTCCGGTTAGCGTTTTGACGAAAATTTGCAT 95701 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | || | ||| | || | ||||| ||||| ||||| Sbjct 95700 ATGCCACCTCGAAGCCGAAGCACCAGATGGAGGGTGGATTCTTTCTGGATATTGTAATCA 95759 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | |||||||| || || || | |||||| ||||| ||| Sbjct 95760 GACAGGGTCCGTCCATCCTCGAGCTGTTTACCCGCGAAGATCAGTCTCTGCTGGTCGGGT 95819 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| || || || ||||| || || || || | || Sbjct 95820 GGAATTCCTTCTTTATCTTGAATCTTCGCCTTGACATTCTCGATGGTGTCGGAAGCCTCG 95879 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||| || || || |||| ||||| | ||| || ||||| Sbjct 95880 ACCTCCAACGTAATCGTCTTTCCGGTTAGCGTTTTGACGAAAATTTGCAT 95929 >seq5300 Length=1069934 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||| || || | || ||| | || ||||||||||| ||||||||||| | || Sbjct 717927 ATGTTATAGTCAGAAAGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAAATAAGTCGT 717868 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || |||||||| |||||||| |||||||| |||||| || ||||| || | Sbjct 717867 TGCTGATCAGGTGGAATTCCTTCCTTATCTTGAATTTTAGCCTTCACATTTTCAATGGAG 717808 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||||||||| || || || || ||||| || | || || | || |||||| Sbjct 717807 TCAGAGGCTTCTACTTCGAGGGTTATAGTCTTACCCGTGAGAGTCTTCACAAAAATCTGC 717748 Query 172068 AT 172069 || Sbjct 717747 AT 717746 >seq8311 Length=725843 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || | || | ||| | || | |||||| || ||||| || Sbjct 133704 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGACTCTTTCTGGATGTTATAGTCA 133645 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || | ||| || || || || || | | || || ||||| Sbjct 133644 GAAAGAGTTCTGCCATCTTCTAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGATCAGGA 133585 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||||||||| |||||||| ||| || || |||| ||| Sbjct 133584 GGAATACCTTCTTTGTCTTGTATTTTTGCCTTTACATTCTCTATTGTGTCAGACGCTTCA 133525 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| ||||| ||||| || | ||||| | ||| ||||||||| Sbjct 133524 ACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACGAAAATCTGCATT 133474 >seq4549 Length=1308415 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||| | || || |||||||||||||||| |||||| ||| ||||| || || Sbjct 663274 ACCACCTCGCAAGCGCAACACTAAATGTAAAGTAGACTCTTTTTGAATGTTATAGTCAGA 663333 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | || |||| |||||| ||||| || || | ||| ||||| || ||||| Sbjct 663334 TAAAGTTCTCCCATCTTCCAGTTGTTTTCCAGCGAAGATCAGTCTTTGTTGATCTGGTGG 663393 Query 171962 TATTCCT 171968 |||||| Sbjct 663394 AATTCCT 663400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905035382819400