Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6170 120 9e-22 seq4298 86.0 2e-11 >seq6170 Length=502003 Score = 120 bits (132), Expect = 9e-22 Identities = 192/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| || |||| |||||| || || ||||| ||| | || || |||||||| Sbjct 389969 TTCCATAGCTTTTATTAGACGACGTTGGATGTAACCTGTTTCGGCCGTCTTCACAGCTGT 390028 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 ||| || || || | ||||| ||||| || |||||| | | ||| ||| || || Sbjct 390029 ATCGATAAGTCCTTCGCGACCGCCCATCGCGTGGAAGTAAAATTCTGACGGAGTGAGACC 390088 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | || |||| ||||||||||| | |||||| || ||||||| ||| | Sbjct 390089 GGCGAGGTACGAATTCTCGACGAAACCACGTGACTCGGGACCGTAATCGTC---CTTAAT 390145 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| ||||| || | || ||||| |||| |||||||| || ||||| ||||| Sbjct 390146 GAAGTGCGGCAGCGTTCGCTTGCGGAAGCCGAATGGTATACGCTTACCCTCAACATTCTG 390205 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| ||| | ||| | ||| ||||| || Sbjct 390206 TTGACCCACGCAAGCAATAACCTGAGAAATGTT 390238 >seq4298 Length=1088206 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 |||| |||| ||||| || |||||| || ||||||||||| | ||| | ||||||||| | Sbjct 743611 TAGCGCCGTAAGCAACCAGACAATCGCGCTCCATTTCACCGAAACGTAAACCACCATCCT 743670 Query 233331 TTGACCTACCCTGGACTGTT---TGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGAT 233387 | || | |||| ||||| || ||||| | || |||||| || | |||||| Sbjct 743671 TAGAACGTCCCT---CTGTTGGCTGTCGAGTCATTACCACTCTTGGCCCTTTGGCACGAG 743727 Query 233388 AATTAATTTTATCTTTAACCATATGCTTCAGTCT 233421 | |||||||| | ||||||||||| | ||| Sbjct 743728 CGTGTATTTTATCCTGCACCATATGCTTTAATCT 743761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471649898802941