Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq7502 253 2e-62 seq3349 107 2e-18 >seq7502 Length=58166 Score = 253 bits (280), Expect = 2e-62 Identities = 324/443 (73%), Gaps = 4/443 (1%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| ||||| || || ||| | || ||||| || || | | || ||| |||| Sbjct 27511 CGGTGGGTTCTTGAGGATGTACGTATTGAGTTTGTGATTGCTCTCTAAGAGGCCATGATG 27452 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACGATGAGCTCA 34320 |||||| || ||||| ||||| | || || |||| | | | || || || || || Sbjct 27451 ACCGCAGGCCTTGCAACCCTGTGAAATCGTGC-CTTTCTTG-GAACTGACCATCAGTTCG 27394 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 |||||||| ||||||||| |||| || || ||| | |||||||||| || || |||||| Sbjct 27393 GTCTCCGGATTGTCACATGCCGGGCATAATACATATCTGCGGATGAATCCGTCGAGCAGG 27334 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | || || ||||| |||||||| || ||||| || ||||| ||| | || Sbjct 27333 TCCTGCAGTTTTGTGGCATCGTGAGAGCCGTTCACAATGAACCGCTCGTTCTTGAAGTCA 27274 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | ||||| || || |||| ||||| ||||| || || || || || ||||||| || Sbjct 27273 AATTGCGTCTGAGCACCCAATTCGCAGCCGAAATATTTAGTAGGATACGTGGCCGGCCGA 27214 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 |||| |||||| || | || |||||||||||| || ||||||||||||||||| || Sbjct 27213 CCAATCGCCTTCGCCACGTCTACCATGTTGACGATTACGGTCTTGATGCCGTTGCCTTTG 27154 Query 34561 CCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620 ||||| |||||||| |||||| ||||| || || |||||||| || || | || Sbjct 27153 CCTTCTACCTTGGCCTGGATGCGAGGCATCTTATAACGGTAGAAAGCATCGCTGATGTTC 27094 Query 34621 CGGTTAACGTTCACAGTCCCCAT 34643 ||||||||||| || ||||||| Sbjct 27093 CGGTTAACGTTGACGCTCCCCAT 27071 >seq3349 Length=644485 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| ||||||| || || ||||| | || ||| || | Sbjct 95701 ATGCAAATTTTCGTCAAAACGCTAACCGGAAAGACGATTACGTTGGAGGTCGAGGCTTCC 95642 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||||| ||||||||||| | || ||||| Sbjct 95641 GACACCATCGAGAATGTCAAGGCGAAGATTCAAGACAAAGAAGGAATTCCACCCGATCAG 95582 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||||||||||||||| ||||||| | || || | |||||||| Sbjct 95581 CAGAGGCTGATCTTTGCGGGTAAACAGCTCGAGGATGGACGGACCCTGTCTGATTACAAT 95522 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| || | || ||||| | |||| ||||| || Sbjct 95521 ATCCAGAAAGAATCCACCCTCCATCTGGTGCTTCGACTTCGAGGTGG 95475 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTGA 110331 ||||| || || |||||||| | || || ||||| |||||| | ||| ||| || | | Sbjct 96841 ATGCAGATTTTCGTCAAAACCCTGACTGGAAAAACGATTACCTTGGAAGTGGAAGCATCA 96782 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || || ||| ||| |||||||||||| | || ||||| Sbjct 96781 -GACACCATTGAGAATGTGAAGGCGAAAATTCAAGACAAAGAAGGCATTCCACCTGATCA 96723 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| || | ||||||||||||||| ||||| | |||| || | || ||||| Sbjct 96722 GCAGAGACTGATCTTTGCGGGTAAACAGCTCGAGGACGGACGAACTTTGTCAGACTACAA 96663 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||||| |||| |||| | |||| || || || Sbjct 96662 TATTCAGAAGGAATCTACTCTGCATTTGGTACTCCGACTTCGTGGCGG 96615 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| ||||||| || || ||||| | || ||| || | Sbjct 95929 ATGCAAATTTTCGTCAAAACGCTAACCGGAAAGACGATTACGTTGGAGGTCGAGGCTTCC 95870 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||||| || |||||||| | || || || Sbjct 95869 GACACCATCGAGAATGTCAAGGCGAAGATTCAAGATAAAGAAGGAATTCCACCCGACCAG 95810 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | |||||||||||||| ||||||| | || || | |||||||| Sbjct 95809 CAGAGACTGATCTTCGCGGGTAAACAGCTCGAGGATGGACGGACCCTGTCTGATTACAAT 95750 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| || | || ||||| | | || ||||| || Sbjct 95749 ATCCAGAAAGAATCCACCCTCCATCTGGTGCTTCGGCTTCGAGGTGG 95703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||||| || || || ||||| || | || ||| | | Sbjct 96385 ATGCAGATTTTCGTGAAAACTTTGACGGGGAAGACCATCACGTTGGAGGTCGAGGCCTCC 96326 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 96325 GATACCATCGAGAATGTGAAAGCTAAGATTCAAGACAAAGAAGGAATCCCGCCTGATCAG 96266 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||||||||||||||| ||||| | | || || | || |||||| Sbjct 96265 CAGAGGCTCATATTTGCGGGTAAACAGCTCGAGGACGGACGCACTCTGTCCGACTACAAC 96206 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||||| | ||| | || | |||| ||||| || Sbjct 96205 ATTCAGAAGGAATCTACCCTTCACTTAGTACTTCGACTTCGAGGTGG 96159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412796854808249