Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Harpegnathos_20saltator_20[refseq_20GCF_5F000147195.1_202010-09-17] 8,893 sequences; 294,465,601 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5157 120 5e-21 seq7686 107 3e-17 seq3238 96.9 5e-14 >seq5157 Length=471682 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || || || || || ||| |||||| |||||| ||| || ||| Sbjct 334426 TGTACTTGGTGACTGCTTTCGTGCCTTCACTGACTGCGTGCTTGGCCAATTCACCCGGCA 334367 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||| | ||| || || || ||||| |||| | ||| || ||||||||| Sbjct 334366 AGAGCAGCCTCACAGCAGTTTGTATCTCCCGGGAGGTGATGGTCGAGCGCTTGTTGTAAT 334307 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| || || || | | |||| | |||| || ||||||||| || ||||| Sbjct 334306 GCGCCAATCGCGACGCTTCCGCGGCGATCCTCTCGAACACGTCGTTGACGAAGCTGTTCA 334247 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||| || ||| |||||||| ||||| || || |||| Sbjct 334246 TGATGCTCATAGCTTTACTGGAGATACCAGTGTCCGGGTGCACTTGCTTCAGTACTTTGT 334187 Query 1485710 A 1485710 | Sbjct 334186 A 334186 >seq7686 Length=992852 Score = 107 bits (118), Expect = 3e-17 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||| || ||||| || || || ||| |||||| | |||| ||| || | | Sbjct 154822 TACTTGGTAACAGCCTTTGTCCCTTCACTGACAGCGTGCTTCGCCAATTCACCAGGTAGC 154763 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | || | |||||||||||||||||| || | | ||| || ||||||||| | Sbjct 154762 AGGAGCCTCACGGCGGTCTGGATCTCCCGAGAGGTGATGGTAGAGCGCTTGTTGTAATGA 154703 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| || ||||||| | ||||| |||| | ||||| ||||| ||||||| Sbjct 154702 GCCAATCGCGATGCCTCGGCAGCAATGCGCTCGAAGACATCGTTAACAAAACTGTTCATG 154643 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 || ||| | |||| ||||||| || ||| || || |||||||| || || ||||| Sbjct 154642 ATGCTCATGGCTTTGCTGGAGATACCGGTGTCAGGATGGACCTGCTTCAGTACTTTGTA 154584 >seq3238 Length=585379 Score = 96.9 bits (106), Expect = 5e-14 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || || |||||| | |||||||| ||| ||| Sbjct 9000 TGTACTTGGTGACTGCTTTGGTGCCTTCACTCACAGCGTGCTTCGCCAGTTCTCCGGGCA 8941 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || || || ||||| || | |||||| |||||||| Sbjct 8940 ATAGAAGTCTGACCGCAGTTTGAATCTCTCGAGACGTGATCGTCGATCGCTTGTTGTAAT 8881 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||| || |||| |||| || |||| | || || || || ||||| Sbjct 8880 GCGCCAAGCGCGATGCTTCGGCAGCGATACGCTCGAAAACATCATTAACGAAGCTGTTCA 8821 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| ||||||| || |||||| ||||||||||| | || || | Sbjct 8820 TGATGCTCATCGCCTTGCTGGAGATTCCGGTGTCGGGATGCACCTGCTTCAAGACTTTAT 8761 Query 1485710 AAA 1485712 ||| Sbjct 8760 AAA 8758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915300411029027